CCGGGACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCCCTTACCCGCTTGCCCATGGGCAGATCTGATGGAGAC
GTTTTCTCAGTTAAGGTTCTGTCTTCCCAGATGACCTAGTTTCAAACTGA
CAAAAGAGCCAAGCAGCACAGTTGGCTTACAGCTTCAGGCTCTGAGATGT
CAATTTAGGCAGGAGAAAGATGTTAAAGACAGACAGACGCCAATCTAGAC
ACAGGCTCCATCTGCCCCTACCTCCTAGTATCTTACACTGTCCTGAATTC
CAGGGGCCCAGTCCTCTAAGGACTTGTCAGGATCTGTGAGGCTGAGGATC
CAAGGCTGCTTCCCAGGGCTGTAGCTTTAACTTGCTGACCTCAGTCTGAG
CCATGAAGACTCTCTGAGGAGCTGTGGAGTTATGGGTAGGGCTTCCTGGG
ACCCCAGGAGTAAAGGTGGCCATGCCATTGGTTAACCAAAGGACAAATGT
CTAAGACCTGCCGTGCAAAGTTACCCAGAATCCTGTGATCCGAGTAGGAA
CTACCATATCTATTTAAAATAATTGATTTAGGCAGGGTGCGATGACCCCT
TTGTCTTGATTAGGCCTAATGGCTGCCCTGCTATGGCTGGAACACACAGC
CTCCTTTGTGTGTCCAGGGCAAGAGTTGAGGCAAGAAACTCTCTCAGCTT
CTAGTGGTCTGGAGGAGGTGCCTATGTTTGGAAG

TTTCCTAGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGTGGAATGGTGGCCGACGA
GTCTATTTGCAGGAGTGGGATATCACGTTTAGTGTGGTGATTTGAATATG
CTTGGCCCTCAGAGTGGCACTATTAGGAGGTGTGGCCTTGTTGGAAGAGG
TGTGATCTAATTGGTGGAAGTGTGTCACTTTAGGGGTGGGCTTCAAGACC
CTCCTCCTACCTGCCTGAGGAAAGTCTGCTCCTGGCTTCCTTTGGATGAA
AATGTAGAACTCTCAGGCCCTCCAACGCCGTGCCTACTTGAATGCTGCCA
TGCTTCCTGCCATGATGATAAAGGACTGTATCTCTAAACCTGTAAGCCAG
CCCCAATTGTTGTCTTTTATAAGAGTTTCCTAGGTCATGGAGTCTGTTCA
CAGCAATGGAAACCCTAAGACACTTAGCAAGAGCTGCTTTAAAAACATAG
TGATATCAAGTTGGGATGGGCTGAGAAGTATATGAGATATATGGACAAAA
GACAAAGTGCTGTTATTTCAAAATCCTACATCTGTCAAGGAAGCGACAGT
TCTGTCTGAGTGCAGTAAAAACTTCAAACAGTGGCTTGGAGGTCAGCTGG
GTGGATCCACATATTGCAGCTAGAGAATATCTGGTCTACATTTGCAAGGA
AGCAATGACTTGTTACCTACTGCACCA

Query= MSMg01no540_k05.b1 MSMg01no540_k05.b1 CHROMAT_FILE:
MSMg01no540_k05.b1 PHD_FILE: MSMg01no540_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:58 2005
         (644 letters)



>mm_chr1_93100258_93101301
          Length = 1044

 Score = 1193 bits (617), Expect = 0.0
 Identities = 623/625 (99%)
 Strand = Plus / Plus

                                                                       
Query: 20  gcttgcccatgggcagatctgatggagacgttttctcagttaaggttctgtcttcccaga 79
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 gcttgcccatgggcagatctgatggagacgttttctcagttaaggttctgtcttcccaga 279

                                                                       
Query: 80  tgacctagtttcaaactgacaaaagagccaagcagcacagttggcttacagcttcaggct 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tgacctagtttcaaactgacaaaagagccaagcagcacagttggcttacagcttcaggct 339

                                                                       
Query: 140 ctgagatgtcaatttaggcaggagaaagatgttaaagacagacagacgccaatctagaca 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ctgagatgtcaatttaggcaggagaaagatgttaaagacagacagacgccaatctagaca 399

                                                                       
Query: 200 caggctccatctgcccctacctcctagtatcttacactgtcctgaattccaggggcccag 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 caggctccatctgcccctacctcctagtatcttacactgtcctgaattccaggggcccag 459

                                                                       
Query: 260 tcctctaaggacttgtcaggatctgtgaggctgaggatccaaggctgcttcccagggctg 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tcctctaaggacttgtcaggatctgtgaggctgaggatccaaggctgcttcccagggctg 519

                                                                       
Query: 320 tagctttaacttgctgacctcagtctgagccatgaagactctctgaggagctgtggagtt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tagctttaacttgctgacctcagtctgagccatgaagactctctgaggagctgtggagtt 579

                                                                       
Query: 380 atgggtagggcttcctgggaccccaggagtaaaggtggccatgccattggttaaccaaag 439
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ataggtagggcttcctgggaccccaggagtaaaggtggccatgccattggttaaccaaag 639

                                                                       
Query: 440 gacaaatgtctaagacctgccgtgcaaagttacccagaatcctgtgatccgagtaggaac 499
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 640 gacaaatgtctaagacctgccgtgcaaagtaacccagaatcctgtgatccgagtaggaac 699

                                                                       
Query: 500 taccatatctatttaaaataattgatttaggcagggtgcgatgacccctttgtcttgatt 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 taccatatctatttaaaataattgatttaggcagggtgcgatgacccctttgtcttgatt 759

                                                                       
Query: 560 aggcctaatggctgccctgctatggctggaacacacagcctcctttgtgtgtccagggca 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 aggcctaatggctgccctgctatggctggaacacacagcctcctttgtgtgtccagggca 819

                                    
Query: 620 agagttgaggcaagaaactctctca 644
           |||||||||||||||||||||||||
Sbjct: 820 agagttgaggcaagaaactctctca 844


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no540_k05.g1 MSMg01no540_k05.g1 CHROMAT_FILE:
MSMg01no540_k05.g1 PHD_FILE: MSMg01no540_k05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:58 2005
         (508 letters)



>mm_chr1_93295532_93296439
          Length = 908

 Score =  679 bits (351), Expect = 0.0
 Identities = 363/367 (98%)
 Strand = Plus / Minus

                                                                       
Query: 142 ggaaagtctgctcctggcttcctttggatgaaaatgtagaactctcaggccctccaacgc 201
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 908 ggaaagtctgctcctggcttcctttggatgaaaatgtagaactctcaggtcctccaacgc 849

                                                                       
Query: 202 cgtgcctacttgaatgctgccatgcttcctgccatgatgataaaggactgtatctctaaa 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 cgtgcctacttgaatgctgccatgcttcctgccatgatgataaaggactgtatctctaaa 789

                                                                       
Query: 262 cctgtaagccagccccaattgttgtcttttataagagtttcctaggtcatggagtctgtt 321
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 cctgtaagctagccccaattgttgtcttttataagagtttcctaggtcatggagtctgtt 729

                                                                       
Query: 322 cacagcaatggaaaccctaagacacttagcaagagctgctttaaaaacatagtgatatca 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 cacagcaatggaaaccctaagacacttagcaagagctgctttaaaaacatagtgatatca 669

                                                                       
Query: 382 agttgggatgggctgagaagtatatgagatatatggacaaaagacaaagtgctgttattt 441
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 668 agttgggatgggctgagaagtgtatgagatatatggacaaaagacaaagtgctgttattt 609

                                                                       
Query: 442 caaaatcctacatctgtcaaggaagcgacagttctgtctgagtgcagtaaaaacttcaaa 501
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 608 caaaatcctacatctgtcaaggaagagacagttctgtctgagtgcagtaaaaacttcaaa 549

                  
Query: 502 cagtggc 508
           |||||||
Sbjct: 548 cagtggc 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)