NGGTAACTTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTTTGCCTGTATGCTATTTATCCAGTGTTGAAGGCCCA
CTGGTCTGAGGTCTGGAGACACGGTCAGAATCTTACTCTTTCGATCTTCT
CCATTAACCAGAGCTTGGGCAACAGAGGACATATGCCTAGACATTGTGCC
CAGAGGATGCAAAAACTGAGAAAACACAAGGCAGGATTATGTAACAGAGT
TGCTGGGTGGGGCATGACCACCAAGCTGGCAGGTTTTGAGCCAGGAGCAG
GCAGCATCTTGGGTGTGGCAGAGGCAGCTCATCTTCTGCAGCAGCCTCCT
GGGGCACAGGCACAGCCTGGCACAGATGGCTATGTGGGTAGCTAGCAAAG
ATCAAAGGCAAACATCACCTTTGCTGTCTGGGATAAAGGCAGCTTTGGAC
TAGTGTGGGCTCTGGCTCAGACATTAAAGCTCAGGCTTATATAAGCCAGG
ATGCTCAGAGAACCCTGTGCCCAGTGGGAGCTAGAGCTCAACCCTCCAGC
TGTTCATGGTGTTCCCGAGAATTGTGCCAGGATGGAGATCCCAGTGTGCT
AGTCTATTATCTGAGTGAATGGGACCACCCCTCATTTCCTGAACGTCCCT
TGTTCACCATGAATGAGGGTCCGTGGATCTCCTGTCCTCCTAGTGAAAGG
AACTCCCGGATTGAAGGAGCACTCTGATTCCCCC

CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGAGTTACCACTGACGGTTGGAAGGATC
CTTCAGGACTTCTCAGATCCTGGGATGCATTGTGAATTTCCCACAATGTA
ATGCAGGGTTTCTCAACCATATCTGACTTCCAAGCATGCTTTTCCAAGCA
AGGGGCAGGGGGCACTTAGAGGCAACCTCTGCTGAAGTACCTCACCTCAG
GAGCCATCCCAACACTCTTGCTGGCCAGACTTAATGAAGTCACTCACGGC
TAGTTTGTCTCAATGGTATCTCACAGTCTGATGGTTGAGAAATGAGAGCC
GGGACCTGGCTTTCAGGTTTGGCCACAAAGGCAGGCGATGACTTAGCTGA
TCTCAAACGTGATTTATCTTTCCCCACCCAGACTCTCACCAGGAAGATGA
ATGCCTGGGGTCCACACAGTAAGACTAGCTGGGGCAAAGAAGAAGTGATG
AATTGATTAAGTCGGTTTAGAGGCAGGCCACCAGCAACCACACCTAATTA
CTCAGTCAGCACTCAGGGCCTGAGCATGAATTCCACACCAGTGACTCACT
GGTCTTCCTTCCACAGGCTGCTGGACATGTTTCCTCCTCGAACACTTTGG
GCAAGCTTGAGGAGCCCTGGCCTCTGCTAGCACTGTAGCCCATGGGCATC
ACCCAGGCAAGATGCCAGCCCTGACGATAGAGAGGAAGTATCTGGGGACC
CA

Query= MSMg01no540_o17.b1 MSMg01no540_o17.b1 CHROMAT_FILE:
MSMg01no540_o17.b1 PHD_FILE: MSMg01no540_o17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:22 2005
         (419 letters)



>mm_chr1_91934399_91935217
          Length = 819

 Score =  766 bits (396), Expect = 0.0
 Identities = 411/416 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttttgcctgtatgctatttatccagtgttgaaggcccactggtctgaggtct 63
           ||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttttagtttgtatgctatttatccagtgttgaaggcccactggtctgaggtct 263

                                                                       
Query: 64  ggagacacggtcagaatcttactctttcgatcttctccattaaccagagcttgggcaaca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggagacacggtcagaatcttactctttcgatcttctccattaaccagagcttgggcaaca 323

                                                                       
Query: 124 gaggacatatgcctagacattgtgcccagaggatgcaaaaactgagaaaacacaaggcag 183
           |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gagggcatatgtctagacattgtgcccagaggatgcaaaaactgagaaaacacaaggcag 383

                                                                       
Query: 184 gattatgtaacagagttgctgggtggggcatgaccaccaagctggcaggttttgagccag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gattatgtaacagagttgctgggtggggcatgaccaccaagctggcaggttttgagccag 443

                                                                       
Query: 244 gagcaggcagcatcttgggtgtggcagaggcagctcatcttctgcagcagcctcctgggg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gagcaggcagcatcttgggtgtggcagaggcagctcatcttctgcagcagcctcctgggg 503

                                                                       
Query: 304 cacaggcacagcctggcacagatggctatgtgggtagctagcaaagatcaaaggcaaaca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cacaggcacagcctggcacagatggctatgtgggtagctagcaaagatcaaaggcaaaca 563

                                                                   
Query: 364 tcacctttgctgtctgggataaaggcagctttggactagtgtgggctctggctcag 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tcacctttgctgtctgggataaaggcagctttggactagtgtgggctctggctcag 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no540_o17.g1 MSMg01no540_o17.g1 CHROMAT_FILE:
MSMg01no540_o17.g1 PHD_FILE: MSMg01no540_o17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:22 2005
         (567 letters)



>mm_chr1_92122052_92123018
          Length = 967

 Score = 1071 bits (554), Expect = 0.0
 Identities = 563/566 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagttaccactgacggttggaaggatccttcaggacttctcagatcctgggatgcattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 agagttaccactgacggttggaaggatccttcaggacttctcagatcctgggatgcattg 812

                                                                       
Query: 61  tgaatttcccacaatgtaatgcagggtttctcaaccatatctgacttccaagcatgcttt 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 tgaatttcccacaatgcaatgcagggtttctcaaccatatctgacttccaagcatgcttt 752

                                                                       
Query: 121 tccaagcaaggggcagggggcacttagaggcaacctctgctgaagtacctcacctcagga 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 tccaagcaaggggcaggggtcacttagaggcaacctctgctgaagtacctcacctcagga 692

                                                                       
Query: 181 gccatcccaacactcttgctggccagacttaatgaagtcactcacggctagtttgtctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 gccatcccaacactcttgctggccagacttaatgaagtcactcacggctagtttgtctca 632

                                                                       
Query: 241 atggtatctcacagtctgatggttgagaaatgagagccgggacctggctttcaggtttgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 atggtatctcacagtctgatggttgagaaatgagagccgggacctggctttcaggtttgg 572

                                                                       
Query: 301 ccacaaaggcaggcgatgacttagctgatctcaaacgtgatttatctttccccacccaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ccacaaaggcaggcgatgacttagctgatctcaaacgtgatttatctttccccacccaga 512

                                                                       
Query: 361 ctctcaccaggaagatgaatgcctggggtccacacagtaagactagctggggcaaagaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ctctcaccaggaagatgaatgcctggggtccacacagtaagactagctggggcaaagaag 452

                                                                       
Query: 421 aagtgatgaattgattaagtcggtttagaggcaggccaccagcaaccacacctaattact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aagtgatgaattgattaagtcggtttagaggcaggccaccagcaaccacacctaattact 392

                                                                       
Query: 481 cagtcagcactcagggcctgagcatgaattccacaccagtgactcactggtcttccttcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 cagtcagcactcagggcctgagcatgaattccacaccagtgactcactggtcttccttcc 332

                                     
Query: 541 acaggctgctggacatgtttcctcct 566
           ||||||||| ||||||||||||||||
Sbjct: 331 acaggctgccggacatgtttcctcct 306


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)