Query= MSMg01no541_a04.b1 MSMg01no541_a04.b1 CHROMAT_FILE:
MSMg01no541_a04.b1 PHD_FILE: MSMg01no541_a04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:29 2005
(617 letters)
>mm_chr1_32819007_32820023
Length = 1017
Score = 636 bits (329), Expect = 0.0
Identities = 344/349 (98%), Gaps = 2/349 (0%)
Strand = Plus / Minus
Query: 5 gaattcatttgttgctgagcttagtttagttgagagattttaaaaattattccttatatc 64
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 348 gaattcatttgttgctgagcttagtttagttgggagattttaaaaattattccttatatc 289
Query: 65 ttatttgtggttatagatatgcttgatatttactacattgtgttgtaactttggtagata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ttatttgtggttatagatatgcttgatatttactacattgtgttgtaactttggtagata 229
Query: 125 atatacacataaattctttttttttctatctcagaatgcataatacagagcagaatggct 184
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 atatacacataaattc-ttttttttctatctcagaatgcataatacagagcagaatggct 170
Query: 185 ttcaactcaaacagacccaccttcctctgcctcctgagagctgctattaaacttgtgtgt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 ttcaactcaaacagacccaccttcctctgcctcctgagagctgctattaaacttgtgtgt 110
Query: 245 tatctgtttgttaaaacagtataagctattgtctttgcccttagttg-tacatcagaatt 303
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 109 tatctgtttgttaaaacagtataagctactgtctttgcccttagttgatacatcagaatt 50
Query: 304 taagagtaagaccctgttactgaagccatgacacactttggtcacaaga 352
||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 49 taagagtaagaccctgttactgaagccatgacacattttggtcacaaga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_a04.g1 MSMg01no541_a04.g1 CHROMAT_FILE:
MSMg01no541_a04.g1 PHD_FILE: MSMg01no541_a04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:29 2005
(585 letters)
>mm_chr1_32673143_32674129
Length = 987
Score = 1069 bits (553), Expect = 0.0
Identities = 578/587 (98%), Gaps = 2/587 (0%)
Strand = Plus / Plus
Query: 1 tatgaagtgatgtgttttattgtgtgacaaaaactacacggacaatcttgaaaacactaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgaagtgatgtgttttattgtgtgacaaaaactacacggacaatcttgaaaacactaa 260
Query: 61 catacgtgtctctacatttttagctaactttttttctaaataatgtttattacttaaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catacgtgtctctacatttttagctaactttttttctaaataatgtttattacttaaaag 320
Query: 121 caataaactgtcttttttcacaaaatcaggtaagaccattatttgattaggattattatt 180
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 caataaactgtcttttctcacaaaatcaggtaagaccattattcgattaggattattatt 380
Query: 181 gatagtatagcttatttatgtttcaagaattgagttgcaaatgacttaaaaatatgagtg 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 gatagtatagcttatttatgtttcaagaattgagtttcaaatgacttaaaaatatgagtg 440
Query: 241 tatataatatgtaataccatataatgtataaaacatataataatacaatcaggcaagatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatataatatgtaataccatataatgtataaaacatataataatacaatcaggcaagatg 500
Query: 301 gcagcaatttgtaaattggtaggtaaaggataggtgaatttctgttatctgttgttagtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 gcagcaatttgtaaattggtaggtaaaggataggtgaatttctgttatctgttgtcagtg 560
Query: 361 tatc--tttttttttacaatttagaaatttcaacttctgtccctaaacaaaaaataggtt 418
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 tatcattttttttttacaatttagaaatttcaacttctgtccctaaacaaaagataggtt 620
Query: 419 agagaaaatatggaatataaaagaaattgaagagagaaaaagaatctctctcatatcctc 478
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agagagaatatggaatataaaagaaattgaagagagaaaaagaatctctctcatatcctc 680
Query: 479 acagtagaaattactttggaaatatttcaacactaaggtgaaattcagaaaaggtgagcc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acagtagaaattactttggaaatatttcaacactaaggtgaaattcagaaaaggtgagcc 740
Query: 539 tgttttaagggaaccatggtaatgaggtcataggaaccaggcgtggt 585
||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 741 tgttttaagggaaccatggtaatgaggtcataggagccaggcgtggt 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 987
Length adjustment: 10
Effective length of query: 575
Effective length of database: 977
Effective search space: 561775
Effective search space used: 561775
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
