NNNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCCTGTAAAGTAGATAGTAGAAATTAAGGAAGAGAATG
TTGAGCATGTGTTTGTATTCTTTAATTATCACCCCACCTCTATGCCCTCC
TTGCTCGGTCCTTGCCGTCCTAAAACAATAACATGGCACATATCTCTGCT
AATCTACCAGAATATGCAGGGATGTACCTTTCCATAAGAAAACAATTTTG
GATATTAATGTTTTCTCTTAACTTAACAACCACAACTCCATCTTAGCACT
AACCTTTTGATTAATTATTTTCCTTTTCTGGCTGTTTTAATTGTTTACTC
TGACACATGGTCACATATTTTATATCCTTCTTCAGTTTGGCGTTTTACTC
ACTCTGGCTCAGCTGAGATCTTTGAAGGTTCATGAAAGATGGTGAGCCTA
TGAAATGTTTAATCAGCATTTTCTAATTTAAACAAGAGTGCTTGAGAATC
ACTAAATAATCTTAAGCTAGAGTCGTTTCTTGTTTTCCTACATACTGATC
TTTAATCTGTATATTTTAATTTTAATATTTAAATTATAAAAGCACTGAAA
TGATATGAAAGGGATGGAGTGAAGGCCAGTCTCCATTTCCTTATGCATTC
TAAGATAAAGGAACAATTATATCTTTAATGAGAATAAAATAGTATTTGGT
AAATTTATTCTTGAAACCTAGAAAATAAATGTCTCAAAACTTGTATGATT
GTGATTATAGTATAAGTA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT
GTCTATCTCTGTACAAATACCATGCCATTTTTATCACTATTGTTCTGTGG
TATAGCTTGAAGACAAGTATTGGGATTCCTCCATAAGTTCTTGTATTGTT
AAAATATTTTTCACTATCCTGTGTTTTTTGTTCTTCCACAAGAAATTGAG
AATTGGTTTTGCCTTTTTTTTTTAAAAAAAGAATTGTGTTGGAATTTTGA
TGGAGATTGCACTGAACATATAGATTGCTTTTGGTAGGATGGCCATTTTT
ACTATGTTAATCCTACCAATCCATGAGCATAGGAGATTTCTCCATTTTCT
GAGGTCTTTGATTTTTTTCTTGAGAGACTGGAAGTTCCAGTCATACAGAT
CTTTCACTTGTTTTGTTAAAGGTACTCAAAGATACTTTATTTTATTTGTG
ACTCTTATGAAGGGTGCTGTTTCCCTATTTTTTTTCTTGCCCTGTTTATC
ATTTGTATAAACGAAAGCTACTTATTAATTTGAGTTAATTTTATATCCAG
CCACTTGGCTGACACTTTTCCCAGCTATACAAGTTCTCTGGTAAATTTTT
AGGGTTGCTTATCATATCATCTGTAAATGGTCATATCTTGACTTCTTTTT
TGCCAATTTGTATCCCACTGATCTCCTTATTTTGTGTTATTGCTCTAGAT
AGAACTTTGAGTA

Query= MSMg01no541_d02.b1 MSMg01no541_d02.b1 CHROMAT_FILE:
MSMg01no541_d02.b1 PHD_FILE: MSMg01no541_d02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:45 2005
         (663 letters)



>mm_chr1_143710541_143711603
          Length = 1063

 Score = 1201 bits (621), Expect = 0.0
 Identities = 648/657 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   attccctgtaaagtagatagtagaaattaaggaagagaatgttgagcatgtgtttgtatt 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 attccctgtaaagtagatagtagaaattaaggaagagaatgttgagcatgtgtttgtatt 266

                                                                       
Query: 67  ctttaattatcaccccacctctatgccctccttgctcggtccttgccgtcctaaaacaat 126
           |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 267 ctttaattataaccccacctctatgccctccttgctcggtccttgccatcctaaaacaat 326

                                                                       
Query: 127 aacatggcacatatctctgctaatctaccagaatatgcagggatgtacctttccataaga 186
           |||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 327 aacatggcacgtatctctgctaatctaccagaacatacagggatgtacctttccataaga 386

                                                                       
Query: 187 aaacaattttggatattaatgttttctcttaacttaacaaccacaactccatcttagcac 246
           || |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 387 aagcaattttggatattaatgttttctcttaacttaacaactacaactccattttagcac 446

                                                                       
Query: 247 taaccttttgattaattattttccttttctggctgttttaattgtttactctgacacatg 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 taaccttttgattaattattttccttttctggctgttttaattgtttactctgacacatg 506

                                                                       
Query: 307 gtcacatattttatatccttcttcagtttggcgttttactcactctggctcagctgagat 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gtcacatattttatatccttcttcagtttggcgttttactcactctggctcagctgagat 566

                                                                       
Query: 367 ctttgaaggttcatgaaagatggtgagcctatgaaatgtttaatcagcattttctaattt 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ctttgaaggttcatgaaagatggtgagcctatgaaatgtttaatcagcattttctaattt 626

                                                                       
Query: 427 aaacaagagtgcttgagaatcactaaataatcttaagctagagtcgtttcttgttttcct 486
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 627 aaacaagagtgcttgagaatcactaaataatcttaagctagagtcgttttttgttttcct 686

                                                                       
Query: 487 acatactgatctttaatctgtatattttaattttaatatttaaattataaaagcactgaa 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 acatactgatctttaatctgtatattttaattttaatatttaaattataaaagcactgaa 746

                                                                       
Query: 547 atgatatgaaagggatggagtgaaggccagtctccatttccttatgcattctaagataaa 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 atgatatgaaagggatggagtgaaggccagtctccatttccttatgcattctaagataaa 806

                                                                    
Query: 607 ggaacaattatatctttaatgagaataaaatagtatttggtaaatttattcttgaaa 663
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 ggaacaattatatctttaatgagaataaaatagtatttggtaaatttattcttgaaa 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)