BAC Information

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BAC

Clone NameMSMg01-541D13
Chromosome1 (Build37)
Map Location 149,768,995 - 149,769,333
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-541D13.T7 (MSMg01no541_d13.b1)MSMg01-541D13.TJ (MSMg01no541_d13.g1)
ACCAG607286AG607287
length763755
length of high quality
(start - end)		698 (48 - 745)679 (77 - 755)
definitionCHROMAT_FILE: MSMg01no541_d13.b1 PHD_FILE: MSMg01no541_d13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:20:47 2005CHROMAT_FILE: MSMg01no541_d13.g1 PHD_FILE: MSMg01no541_d13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:20:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTCCTGAGGAGTACAGAATGGCAGAGAATCACCTGAAAAAAT
GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAACAAACCTGAGAT
TCCACCTCACACCAGTAAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG
GGATCGCAAGCTTTTACAACCACTCTGGATATCAGTTTGGTGGTTCCTTA
GAAAATTGGACATAGTACTACTGGAGGATCCAGCAATACCTCTTCTGGGC
ATATATCCAGACGATGCCCCAACTGGTATAGGCCTTTTTTAATCCTAACA
ATAAAATGAAATTTAAAAATAAATATTTTTCCACTTAATTTGTACTTTTT
ATTTAATCTAAGTCCCTGTACCATAAAATGGTTTCACCTATATTGATAGT
CTGTATTTCTACTTCAAATAAATCTTGGGGAGGAGCTCTGCAGACATACC
TACAAGTGTATCTCTTAGGTGATTCTAAAACCCATCAACATAACAGTCAA
GGTTAAGGACTGTGGTTTTCTGATATCTAACAAGAGTCCATATTGTGCAG
CTTCCCTCTTTCAGTAAATGATGGGAACCATGCCTTACTATGTGAATGTG
AGTCCATAGAAAGAGTGATCTATTCTCTTTTTTTTTTCTTTCCATTTTTT
ATTAAGTATTTAG

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACACTCTACATCATGCTGGCCTTG
TACTCACAGAGATCCACCTACCTGTACCTCCTGGGTGCTGAGATTAAAGG
TCTGTGCTTCCATGGCTGGCCAACTAAAATTTTTTTAAAAAATACTTCTT
TTGCACACAATATATCCTTATTGTGGAATACCCTCTGTCTACTCCTTCCA
GCTCCTCCCCTATTTCTTTTCTATCAGATCTACCCCATTTTTATCTCTTG
TCAGAAAAAACATGCAACTAAAGAATAATAGTAAAATACTTTAAGTATGA
TAAGACAAAACAAACTAATAGGAATACATCAAAATGAAAAAAGCCGAAGG
GGGGGAAAACAACAAAGGGTAAAAGAACCATATATTGCTGCAAAGAGCTA
TTTCTTCCCACACTCAAATACCCTGCAAAAACAGAAAACCATAAATATAA
AACCAAGAAATCCATAATATATATGCAAAGGTTGAAATAAATATATTAAT
TAATATGTTAATGAGAATATGTTGTATTGAGAATAAAGATAAAATTTAAA
TAACATGATGGAATGAACCTGCAAGTGGGCCATCCATATTCAGCCTATTC
TTAAGAGAAATTAGTTTCTCCTGTGAGTTTCTCTTGAATTAAACAAATTT
TCATTTGTAAGTAGATGGGGACAACTTCTGGATTAAGGATGAATACACAT
GTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no541_d13.b1 MSMg01no541_d13.b1 CHROMAT_FILE:
MSMg01no541_d13.b1 PHD_FILE: MSMg01no541_d13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:47 2005
         (698 letters)



>mm_chr1_149768236_149769333
          Length = 1098

 Score =  609 bits (315), Expect = e-178
 Identities = 333/339 (98%), Gaps = 1/339 (0%)
 Strand = Plus / Minus

                                                                        
Query: 343  taatcctaacaataaaatgaaatttaaaaataaatatttttccacttaatttgtactttt 402
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1098 taatcctaacaataaaatgaaatttaaaaataaatatttttccacttaatttgtactttt 1039

                                                                        
Query: 403  tatttaatctaagtccctgtaccataaaatggtttcacctatattgatagtctgtatttc 462
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1038 tatttaatctaagtccctgtaccataaaatggtttcacctatattgatagtctgtatttc 979

                                                                        
Query: 463  tacttcaaataaa-tcttggggaggagctctgcagacatacctacaagtgtatctcttag 521
            |||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978  tacttcaaataaacactaggggaggagctctgcagacatacctacaagtgtatctcttag 919

                                                                        
Query: 522  gtgattctaaaacccatcaacataacagtcaaggttaaggactgtggttttctgatatct 581
            |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 918  gtgattctaaaacccatcaacataacagtcaaggttaaggactgaggtgttctgatatct 859

                                                                        
Query: 582  aacaagagtccatattgtgcagcttccctctttcagtaaatgatgggaaccatgccttac 641
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858  aacaagagtccatattgtgcagcttccctctttcagtaaatgatgggaaccatgccttac 799

                                                   
Query: 642  tatgtgaatgtgagtccatagaaagagtgatctattctc 680
            |||||||||||||||||||||||||||||||||| ||||
Sbjct: 798  tatgtgaatgtgagtccatagaaagagtgatctactctc 760


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space:   748544
Effective search space used:   748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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