BAC Information

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BAC

Clone NameMSMg01-541F13
Chromosome1 (Build37)
Map Location 157,722,413 - 157,854,702
singlet/doubletdoublet
Overlap geneCep350, LOC676894, Tor1aip1
Upstream geneLOC671336, Ier5, Mr1, Stx6, EG667867, BC034090, Xpr1, EG433367, Acbd6, Lhx4, Qscn6
Downstream geneIfrg15, Tor1aip2, A230106N23Rik, Tdrd5, Nphs2, 9430070O13Rik, LOC100038991, Soat1, LOC100039026, Abl2, Tor3a, C530043G21Rik, LOC433368, Ralgps2, Angptl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-541F13.T7 (MSMg01no541_f13.b1)MSMg01-541F13.TJ (MSMg01no541_f13.g1)
ACCAG607382AG607383
length772762
length of high quality
(start - end)		655 (48 - 702)652 (76 - 727)
definitionCHROMAT_FILE: MSMg01no541_f13.b1 PHD_FILE: MSMg01no541_f13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:20:57 2005CHROMAT_FILE: MSMg01no541_f13.g1 PHD_FILE: MSMg01no541_f13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:20:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,722,413 - 157,723,065)(157,854,051 - 157,854,702)
sequence
NCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAAACAAAAGAAGAAACTCACTGTAACCTTACCTGACTGTGTC
ATAGACAGTGACTCATCTGACCAACTGTAACAGGGTTGGTGAGACTTGAC
AGGCAGATGACAGTGTCCTTCAGTCCTGTGACTTGCTTTGCTAGATTCTT
GCTTTGACATAGATAAGCAACTTTTGGGAGGTGACTGTTCAAACAGAAAG
ACAAACAGGAATTATTTTGTCATACAACTGAACTTATATTTAAATCTGAG
ATATAACTAAGTAAAGATAACAATTACAACATTTTAAAATGTATTTATTT
ATTCCCTGTATGGCGGTGCACTATGAGCACAGCTAGTGCCTATGGAGGCA
GCAAAGGCTGTGGAATCCCCTGCAACTACAGTTACTGCCACGTGGGTGCT
GGGAACTGAACCTGGTTCTCTGCAAGAGCAGCAAGTGCTCTTTTTTTAAA
GTATAACATTTTCATATCAAATAAACATTAAATTTAATAATTTATATAAT
AACTGAATAATTAAATTTTAGCACTATTTTATAATTTCACAAAAGGTAAA
AAAAAGAAGTTTAAAAAACATTATTAGAAACAACCTAGATGTCCCTCAAC
TAAAGAATGGATAAAGAAAATGTGGTACATCTACCTAAAGGAATACTATT
CAGCTATTAAAAACAAAGACATCATGAATTTTTCGGGCAAATGGATAGAA
CTTGANGATATCATCCTGAGTG

CCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGAACCAGATGAAGCAACTCCAGT
CTAAGTACCAGAGTCAAAACGAGAAGCTGTGGAAGAGAGGCACCACCTTC
CTAGAAAAACATCTGAATAGCTCCCTCCCTCGGCCCCAGCCTGCCATCCT
GTTGCTCACTGCAGCTCAAGATGCTGCAGAAGTGCTCAAGTGTCTGAGTG
AACAAATTGCCGATGCCTACTCCTCCTTCCGTAGTGTCCGTGCCATCCGG
ATTGACGGGGCAGGTAAAGCTGCTCAGGACAGTGACCTCGTTAAGCATGA
AGTCGATCAGGAGCTGACTGATGGATTTAAAAATGGCCAGAATGCAGCTG
TGGTACACCGCTTCGAATCCCTGCCTGCTGGCTCAACCTTGATCTTCTAT
AAATACTGTGACCATGAAAATGCAGCCTTCAAAGATGTAGCCCTCGTCCT
GACTGTACTGTTGGAGGAGAAGACGCTGGAAGCCAGTTTAGGCCTAAAGG
AAATTGAAGAGAAAGTGAGGGATTTCCTTAAAGTCAAGTTCACCAGCTCT
AGCACTGCCAGCTCCTACAACCACATGGACCCAGACAAGCTGAATGGGCT
CTGGAGCCGCATCTCCCACCTCGTGCTGCCTGTGCAGCCTGAGAACACTC
TGAAAGCAGGCAGCTGCTTATGAGGGAGAGAAGCGGAAAGCCATCTCGGG
TTTGAGCGGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no541_f13.b1 MSMg01no541_f13.b1 CHROMAT_FILE:
MSMg01no541_f13.b1 PHD_FILE: MSMg01no541_f13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:57 2005
         (655 letters)



>mm_chr1_157722209_157723264
          Length = 1056

 Score = 1224 bits (633), Expect = 0.0
 Identities = 648/653 (99%), Gaps = 2/653 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaaa-caaaagaagaaactcactgtaaccttacctgactgtgtcatagacagtg 63
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaaaacaaaagaagaaactcactgtaaccttacctgactgtgtcatagacagtg 264

                                                                       
Query: 64  actcatctgaccaactgtaacagggttggtgagacttgacaggcagatgacagtgtcctt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actcatctgaccaactgtaacagggttggtgagacttgacaggcagatgacagtgtcctt 324

                                                                       
Query: 124 cagtcctgtgacttgctttgctagattcttgctttgacatagataagcaacttttgggag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagtcctgtgacttgctttgctagattcttgctttgacatagataagcaacttttgggag 384

                                                                       
Query: 184 gtgactgttcaaacagaaagacaaacaggaattattttgtcatacaactgaacttatatt 243
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgactgttcaaacagaaagataaacaggaattattttgtcatacaactgaacttatatt 444

                                                                       
Query: 244 taaatctgagatataactaagtaaagataacaattacaacattttaaaatgtatttattt 303
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 445 taaatctgagatataactaagtaaagacaacaattacaacattttaaaatgtatttattt 504

                                                                       
Query: 304 attccctgtatggcggtgcactatgagcacagctagtgcctatggaggcagcaaaggctg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attccctgtatggcggtgcactatgagcacagctagtgcctatggaggcagcaaaggctg 564

                                                                       
Query: 364 tggaatcccctgcaactacagttactgccacgtgggtgctgggaactgaacctggttctc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tggaatcccctgcaactacagttactgccacgtgggtgctgggaactgaacctggttctc 624

                                                                       
Query: 424 tgcaagagcagcaagtgctctttttttaaagtataacattttcatatcaaataaacatta 483
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 625 tgcaagagcagcaagtgctctttttttaaagtataacattttcatatcaaataagcatta 684

                                                                       
Query: 484 aatttaataatttatataataactgaata-attaaattttagcactattttataatttca 542
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 685 aatttaataatttatataataactgaatacattaaattttagcactattttataatttca 744

                                                                       
Query: 543 caaaaggtaaaaaaaagaagtttaaaaaacattattagaaacaacctagatgtccctcaa 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 caaaaggtaaaaaaaagaagtttaaaaaacattattagaaacaacctagatgtccctcaa 804

                                                                
Query: 603 ctaaagaatggataaagaaaatgtggtacatctacctaaaggaatactattca 655
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ctaaagaatggataaagaaaatgtggtacatctacctaaaggaatactattca 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1056
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1046
Effective search space:   674670
Effective search space used:   674670
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no541_f13.g1 MSMg01no541_f13.g1 CHROMAT_FILE:
MSMg01no541_f13.g1 PHD_FILE: MSMg01no541_f13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:57 2005
         (652 letters)



>mm_chr1_157853851_157854902
          Length = 1052

 Score = 1253 bits (648), Expect = 0.0
 Identities = 651/652 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaaccagatgaagcaactccagtctaagtaccagagtcaaaacgagaagctgtggaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 cagaaccagatgaagcaactccagtctaagtaccagagtcaaaacgagaagctgtggaag 793

                                                                       
Query: 61  agaggcaccaccttcctagaaaaacatctgaatagctccctccctcggccccagcctgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 agaggcaccaccttcctagaaaaacatctgaatagctccctccctcggccccagcctgcc 733

                                                                       
Query: 121 atcctgttgctcactgcagctcaagatgctgcagaagtgctcaagtgtctgagtgaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 atcctgttgctcactgcagctcaagatgctgcagaagtgctcaagtgtctgagtgaacaa 673

                                                                       
Query: 181 attgccgatgcctactcctccttccgtagtgtccgtgccatccggattgacggggcaggt 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 attgccgacgcctactcctccttccgtagtgtccgtgccatccggattgacggggcaggt 613

                                                                       
Query: 241 aaagctgctcaggacagtgacctcgttaagcatgaagtcgatcaggagctgactgatgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 aaagctgctcaggacagtgacctcgttaagcatgaagtcgatcaggagctgactgatgga 553

                                                                       
Query: 301 tttaaaaatggccagaatgcagctgtggtacaccgcttcgaatccctgcctgctggctca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tttaaaaatggccagaatgcagctgtggtacaccgcttcgaatccctgcctgctggctca 493

                                                                       
Query: 361 accttgatcttctataaatactgtgaccatgaaaatgcagccttcaaagatgtagccctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 accttgatcttctataaatactgtgaccatgaaaatgcagccttcaaagatgtagccctc 433

                                                                       
Query: 421 gtcctgactgtactgttggaggagaagacgctggaagccagtttaggcctaaaggaaatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gtcctgactgtactgttggaggagaagacgctggaagccagtttaggcctaaaggaaatt 373

                                                                       
Query: 481 gaagagaaagtgagggatttccttaaagtcaagttcaccagctctagcactgccagctcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gaagagaaagtgagggatttccttaaagtcaagttcaccagctctagcactgccagctcc 313

                                                                       
Query: 541 tacaaccacatggacccagacaagctgaatgggctctggagccgcatctcccacctcgtg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tacaaccacatggacccagacaagctgaatgggctctggagccgcatctcccacctcgtg 253

                                                               
Query: 601 ctgcctgtgcagcctgagaacactctgaaagcaggcagctgcttatgaggga 652
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ctgcctgtgcagcctgagaacactctgaaagcaggcagctgcttatgaggga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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