BAC Information

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BAC

Clone NameMSMg01-541I24
Chromosome1 (Build37)
Map Location 62,058,188 - 62,231,735
singlet/doubletdoublet
Overlap genePard3b
Upstream geneLOC433313, LOC100042566
Downstream geneLOC667592, Nrp2, LOC100043070, A430093A21Rik, Ndufs1, Eef1b2, Gpr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-541I24.T7 (MSMg01no541_i24.b1)MSMg01-541I24.TJ (MSMg01no541_i24.g1)
ACCAG607548AG607549
length761774
length of high quality
(start - end)		633 (52 - 684)619 (78 - 696)
definitionCHROMAT_FILE: MSMg01no541_i24.b1 PHD_FILE: MSMg01no541_i24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:16 2005CHROMAT_FILE: MSMg01no541_i24.g1 PHD_FILE: MSMg01no541_i24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,231,107 - 62,231,735)(62,058,188 - 62,058,806)
sequence
NNNTTTCCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCACTCACCATCTGGATGCAAATGTTTTGATGCATAGCTC
TTACCAAGGGCCAATGATAAAACACACAGTGTTTATTTTTCTCTTCCTGG
ATCATGCCCTCACTGACAGAGTCACACTTTCTGTTGTCTCAACAGAATTG
GCTTGTGGGCCCGTGATTTTATCTCACAATGAAGAAATCGGAGTGCTCTC
CTTCATGAACTCTGTGTTCCTGAAGGTAGAACTGGTCAGAGGGAGGCAGC
TCTATTTAGACGGCTTAAACTACTGGCACCGCTTTCCACTTGTTCTTGCT
TTCCCTGGGTACTCAACTTCTAAAGTCTCTTCTTCCTTGCTATAATATGT
CCATGAAAGCAAGACAAGGGTGAGGAAATAAAATTTTATTGCTTTAATTC
TGGTAAAATCAGCATGTAAATGTGAACATTTTAAAAGTTCAGAACAGTTC
CAATCAATATTTTGCTAAATGAAGGTTGGGCAGGACTCCTTTCCTTCATG
AACTAACGTAACCGCATTTTCCAATGCAGGCACGTAGATTGCTCACAGAC
TACATGAGAATGATCTCAATTGAGCTCAAGCCCAAGGAGTCCAGCTTCTA
AAAGTAATCCAGAGTATTCTCTTTTAACTTCAGATGCGCTTCAAAGGAAG
CCTCATCTCAGCACAATTAATGCATGTGCGTATGTTTTTAGTCAAGTGCT
TTCTTGATCGC

NCCCAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAAAAAGCTACATA
GTGAGATGTTGTTTCAAAAAATAAAATAAAATTACTGCTAAATTTATTAT
ATATAGCCGAACCAAATAACCTTACTTTGTCTTGATTTTCTGAAAAGCTT
CTGTAGTGTCTCTTTAAAAGCAAACCAAATGGAAATTAATGACCTATGGT
CTTTATAATTTTCCTGCATATTTTGGAATCAAAGCTAACAAAGCAGTCTG
CATAGATGGTGAAGGGCTGGTTGGTGGCTGCTCCTCTTCTAGAGCCAGGC
TTGTGGCTTCAGCAACCTTGCAGCCCCATCGCTCATTTGCATAATGGATG
CCTTTTTATCCATTATGCAAATGGTATGAGAGGAAAATTAGGCAATAAGG
GAAGACGAAAGGAGAAAATTGCTCTTGCTTGTTTTAATATTCTATTTATA
AGCAAGTGCTGTGGGCTTCGAAAGACAGACTCGGGGTATCCCTGCCTTGG
GAAACTTGTTTCCACCTTTCTCTTCTGGGCTTTTTCAGGAAAGAAAGCTT
GTTTTCGGTTTTCATTTCACAGCTTCTTTTGTTGGACCATCTGATAAAGA
TAGTGGTGTTGAATCCAAGAAGAAAAACCAACTCACCTTCTCTTCTTTTC
AAAGTAGATTCTTTTTCTATTTCTAAAAGAATTATTGGATTTTTATTCAT
TCATTCATTCATTCATTCATTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no541_i24.b1 MSMg01no541_i24.b1 CHROMAT_FILE:
MSMg01no541_i24.b1 PHD_FILE: MSMg01no541_i24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:16 2005
         (633 letters)



>mm_chr1_62230903_62231935
          Length = 1033

 Score = 1193 bits (617), Expect = 0.0
 Identities = 626/629 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccactcaccatctggatgcaaatgttttgatgcatagctcttaccaagggccaat 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 gaattccactcaccaactggatgcaaatgttttgatgcatagctcttaccaagggccaat 774

                                                                       
Query: 65  gataaaacacacagtgtttatttttctcttcctggatcatgccctcactgacagagtcac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 gataaaacacacagtgtttatttttctcttcctggatcatgccctcactgacagagtcac 714

                                                                       
Query: 125 actttctgttgtctcaacagaattggcttgtgggcccgtgattttatctcacaatgaaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 actttctgttgtctcaacagaattggcttgtgggcccgtgattttatctcacaatgaaga 654

                                                                       
Query: 185 aatcggagtgctctccttcatgaactctgtgttcctgaaggtagaactggtcagagggag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 aatcggagtgctctccttcatgaactctgtgttcctgaaggtagaactggtcagagggag 594

                                                                       
Query: 245 gcagctctatttagacggcttaaactactggcaccgctttccacttgttcttgctttccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gcagctctatttagacggcttaaactactggcaccgctttccacttgttcttgctttccc 534

                                                                       
Query: 305 tgggtactcaacttctaaagtctcttcttccttgctataatatgtccatgaaagcaagac 364
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tgggtacttaacttctaaagtctcttcttccttgctataatatgtccatgaaagcaagac 474

                                                                       
Query: 365 aagggtgaggaaataaaattttattgctttaattctggtaaaatcagcatgtaaatgtga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aagggtgaggaaataaaattttattgctttaattctggtaaaatcagcatgtaaatgtga 414

                                                                       
Query: 425 acattttaaaagttcagaacagttccaatcaatattttgctaaatgaaggttgggcagga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 acattttaaaagttcagaacagttccaatcaatattttgctaaatgaaggttgggcagga 354

                                                                       
Query: 485 ctcctttccttcatgaactaacgtaaccgcattttccaatgcaggcacgtagattgctca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ctcctttccttcatgaactaacgtaaccgcattttccaatgcaggcacgtagattgctca 294

                                                                       
Query: 545 cagactacatgagaatgatctcaattgagctcaagcccaaggagtccagcttctaaaagt 604
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 293 cagactacatgagaatgatctcaactgagctcaagcccaaggagtccagcttctaaaagt 234

                                        
Query: 605 aatccagagtattctcttttaacttcaga 633
           |||||||||||||||||||||||||||||
Sbjct: 233 aatccagagtattctcttttaacttcaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no541_i24.g1 MSMg01no541_i24.g1 CHROMAT_FILE:
MSMg01no541_i24.g1 PHD_FILE: MSMg01no541_i24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:16 2005
         (619 letters)



>mm_chr1_62057988_62059006
          Length = 1019

 Score = 1181 bits (611), Expect = 0.0
 Identities = 617/619 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccaaaaagctacatagtgagatgttgtttcaaaaaataaaataaaattactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggacagccaaaaagctacatagtgagatgttgtttcaaaaaataaaataaaattactg 260

                                                                       
Query: 61  ctaaatttattatatatagccgaaccaaataaccttactttgtcttgattttctgaaaag 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaatttattatatatagccgaaccaaataaccttactttgtcttgattttctgaaaag 320

                                                                       
Query: 121 cttctgtagtgtctctttaaaagcaaaccaaatggaaattaatgacctatggtctttata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttctgtagtgtctctttaaaagcaaaccaaatggaaattaatgacctatggtctttata 380

                                                                       
Query: 181 attttcctgcatattttggaatcaaagctaacaaagcagtctgcatagatggtgaagggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attttcctgcatattttggaatcaaagctaacaaagcagtctgcatagatggtgaagggc 440

                                                                       
Query: 241 tggttggtggctgctcctcttctagagccaggcttgtggcttcagcaaccttgcagcccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggttggtggctgctcctcttctagagccaggcttgtggcttcagcaaccttgcagcccc 500

                                                                       
Query: 301 atcgctcatttgcataatggatgcctttttatccattatgcaaatggtatgagaggaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcgctcatttgcataatggatgcctttttatccattatgcaaatggtatgagaggaaaa 560

                                                                       
Query: 361 ttaggcaataagggaagacgaaaggagaaaattgctcttgcttgttttaatattctattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaggcaataagggaagacgaaaggagaaaattgctcttgcttgttttaatattctattt 620

                                                                       
Query: 421 ataagcaagtgctgtgggcttcgaaagacagactcggggtatccctgccttgggaaactt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataagcaagtgctgtgggcttcgaaagacagactcggggtatccctgccttgggaaactt 680

                                                                       
Query: 481 gtttccacctttctcttctgggctttttcaggaaagaaagcttgttttcggttttcattt 540
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 681 gtttccacctttctcttctgggctttttctggaaagaaagcttgttttcggttttcattt 740

                                                                       
Query: 541 cacagcttcttttgttggaccatctgataaagatagtggtgttgaatccaagaagaaaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cacagcttcttttgttggaccatctgataaagatagtggtgttgaatccaagaagaaaaa 800

                              
Query: 601 ccaactcaccttctcttct 619
           |||||||||||||||||||
Sbjct: 801 ccaactcaccttctcttct 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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