Query= MSMg01no541_l06.b1 MSMg01no541_l06.b1 CHROMAT_FILE:
MSMg01no541_l06.b1 PHD_FILE: MSMg01no541_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:27 2005
(690 letters)
>mm_chr1_166111482_166112571
Length = 1090
Score = 1154 bits (597), Expect = 0.0
Identities = 667/695 (95%), Gaps = 9/695 (1%)
Strand = Plus / Minus
Query: 5 gaattccaagagcacagtgcccggggtaaaggggatatgtgtttaccattctaacacatt 64
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| | ||
Sbjct: 1021 gaattccaagagcacagtgcctggggtaaagggtatatgtgtttaccattctaacccgtt 962
Query: 65 ttgccaagttatcccacggaatggctttagcagcacattgggccaccagaa--tgtgtga 122
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 961 ttgccaagttatcccacggaatggctttagcagcacattgggccaccagaatgtgtgtga 902
Query: 123 tagc-------ttctgaagcctcaacagcagatggtgggatatgaacctgccagtctgat 175
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 901 tagcttttgctttctgaagcctcaacagcagatggtgggatatgaacctgccagtctgtt 842
Query: 176 aggtacagagtagcaccccagtaaaagttcactctcatttttcttactaggaatgtcata 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 aggtacagagtagcaccccagtaaaagttcactctcatttttcttactaggaatgtcata 782
Query: 236 tgaagagctactagagcttctctggcaccttccctccgacacgggaacacaagaacagca 295
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 781 tgaagagttactagagcttctctggcaccttccctccaacacgggaacacaagaacagca 722
Query: 296 ctgtgctcgtagaactgatgtgagacccttagcaaacacctactataagggttagcagtg 355
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 721 ctgtgctcgtagaactgatgtgagacccttagcaaacacctactacaagggttagcagtg 662
Query: 356 gcaagcattcaacaagttctagctgccattgtccctgttgctatcatcaggccacatccc 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gcaagcattcaacaagttctagctgccattgtccctgttgctatcatcaggccacatccc 602
Query: 416 cacagggacttggggataattgaatgcctcagaggataagaatgcctaggtggaaaccaa 475
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 601 cacggggacttggggataattgaatgtctcagaggataagaatgcctaggtggaaaccaa 542
Query: 476 tgcatacctcccttgagagctggccactcgtgacatcataattgagacccacacactaag 535
|||| |||| |||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 541 tgcacacctaccttaagagctggccactcatgacatcataattgagacccacacactaag 482
Query: 536 gaccctgtgggccatgcctttgatcttgacttggcggtctgagccccgactcacttgtcc 595
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 481 gaccctgtgggccatgcctttgatcttgacttggcggtctgagccccaactcacttgtcc 422
Query: 596 atattcgcgggtatcacgggtgcatagttccaaatgacctcctctgcggcgatgaagtac 655
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 421 atattcgcaggtatcacgggtgcatagttccaaatgacctcctctgcggctatgaaatac 362
Query: 656 tcccacctcttcatgtaccgcctctgctcccgagt 690
||||| |||||||||||||||||||||||||||||
Sbjct: 361 tcccatctcttcatgtaccgcctctgctcccgagt 327
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space: 734400
Effective search space used: 734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_l06.g1 MSMg01no541_l06.g1 CHROMAT_FILE:
MSMg01no541_l06.g1 PHD_FILE: MSMg01no541_l06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:28 2005
(560 letters)
>mm_chr1_165960570_165961527
Length = 958
Score = 884 bits (457), Expect = 0.0
Identities = 533/565 (94%), Gaps = 14/565 (2%)
Strand = Plus / Plus
Query: 1 attctttttcttaaaaaaccaaaccaaaccaaacaaaaaacaaacaaacaaaaaaag--- 57
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 203 attctttttcttaaaaaaccaaaccaaaccaaacaaaaaacaaacaaacaaacaaagccc 262
Query: 58 -ccaaaaaaaaaaaaacccttctatatcttgccaactaagtgtctaccgtatacatggca 116
|| |||||| |||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 263 ccc------aaaaaaccccttctatatcttgccaacaaagtgtctactgtatacatggca 316
Query: 117 aaatatgaggcactgggtattctgtcctatatcctctgtgaattgtgaatggtgataaaa 176
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aaatatgaggcactgggtgttctgtcctatatcctctgtgaattgtgaatggtgataaaa 376
Query: 177 atttgcaagctatgccaatttggtgagttttcctccagaagcatacagtgcccataagga 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 atttgcaagctatgccaatttggtgagttttcctccagaagcatacagtgcccataagga 436
Query: 237 gaataagataagg-gaagtgataactcggaatcgacctcagatttctcagcttagtgcct 295
||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 437 gaataagataaggagaagtgataacacggaatccacctcagatttctcagcttagtgcct 496
Query: 296 gggtgggaactgagaagtcaatggtgtaggatcctactgtagtagttgctaagtaggtga 355
| |||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 497 gagtgggaactg---agtcaatggtgtaggatcctactatagtagttgctaaataggtga 553
Query: 356 gaggccattcacctatgtcacgtggtgattatgacctgtgctatggtgtcctcccagcac 415
||||||||||||||| ||| ||||||||||||| ||||||| ||||||||||||||||
Sbjct: 554 gaggccattcacctacatcatgtggtgattatgatgtgtgctaaggtgtcctcccagcac 613
Query: 416 ctgcatccatggcttttgctcagtaggaactcacaactcagttcataatatggggaattc 475
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 614 ctgcatccatggcgtttgctcagtagaaactcacaactcagttcataatatggggaattc 673
Query: 476 ccagcagtttgtatgcaaagcagagcaggagtccacacactaaaggaaaggtcatgcttg 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ccagcagtttgtatgcaaagcagagcaggagtccacacactaaaggaaaggtcatgcttg 733
Query: 536 tttgtatccttggaaacttgagaaa 560
|||||||||||||||||||||||||
Sbjct: 734 tttgtatccttggaaacttgagaaa 758
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 958
Length adjustment: 10
Effective length of query: 550
Effective length of database: 948
Effective search space: 521400
Effective search space used: 521400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
