BAC Information

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BAC

Clone NameMSMg01-541M05
Chromosome1 (Build37)
Map Location 36,696,775 - 36,697,220
singlet/doubletsinglet
Overlap geneBC050210
Upstream geneLOC100041544, LOC666283, LOC100041091, EG666290, Hs6st1, Ugcgl1, LOC100041123, Lincr, Arid5a, 4632411B12Rik, 4930533C12Rik, Lman2l, Cnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, EG623414
Downstream geneCox5b, Actr1b, 4933424G06Rik, Zap70, Tmem131, EG241053, A230074B11Rik, 4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-541M05.T7 (MSMg01no541_m05.b1)MSMg01-541M05.TJ (MSMg01no541_m05.g1)
ACCAG607701AG607702
length749746
length of high quality
(start - end)
546 (77 - 622)332 (335 - 666)
definitionCHROMAT_FILE: MSMg01no541_m05.b1 PHD_FILE: MSMg01no541_m05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:33 2005CHROMAT_FILE: MSMg01no541_m05.g1 PHD_FILE: MSMg01no541_m05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAAGATGCG
CGGATTCAGACCCTCTTCCCTCAGAATACTAATGAGCAGTAGACCAGGTG
TTGAATCCTGCTTTGATTTCTGGAGAAATGCCCTGCCTCGTGTGGCACAT
GCATGTCACAGTGTGTGTGTGTAAAGAAGGCAAGGCACTGGGTAAGGGCC
ACTTTCTTAGATTGTCTTTCATTTCCTGATCATACCCAAGTCTTCTGGTC
TAGATATAAGAGTGGGAACAGGAGCCATTCAATCATGACCATATGGTACT
AGCCAGAAACATGACCTTAGAGCAGCAGTTCTCAACCTTTCTCATGCTGC
AACTCTTTGTTCCTCATGTTGTGGTGAACCCCACCATGAAATTATTTCAT
TGCTACTTCATAACTGTAATTTTACTACTGTGATTAGTAATAATGTAAAT
ATCTGACCTGTGAGCCCTCTGGGGGTCAGAACCAACAGGTTGACAACTGA
AAAAAACAAAACATTTTCTACCTTAGAGGAAGGTAGAAAATTGGGAGGTC
TTTCCATACAGTTGATCCTGGGCCTCTGGAATGGCTCAGCCAGGTAAAGA
CACTTGCTGCTAAGTGTGGTGACCCAGGTTAGATCCCTAGAACCCAGTGG
AGGAAAGAACCAGTTCCCAAAAGCTGATCTCTGATCTCCACCGTGAACTA
TGGTGTACATATGTATATTCATATGTACCTGTACTGACACATCACACAT
TTTCTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGAGACGCACCCAAACCA
TAGCCCCAGGAAGGACTGTACAGCCTAGAATTTCAATTAGGATAGAAAGT
GGATCTAATTCAATGCTCTAGTGTAAAAGCCCCATAGGCTCAGCAATCCC
AGCCACTCACTGCAGGCTCTCCAAGGAGCTTTTGTGGTGGCAAGCATTTA
GATAAACTTGAAATCTGGACACCTGGGACTGAAGATCTCATGTTCTGATT
TCTGAGTGGGGCAGGGACACAATCAGTTCTTTTTCTTATTGATTTGCCCA
AGGTGATAGATTGCCACATGTGGATTGTGGCGTTGCTGTCATCTCAGGGT
TACTATTACTGTGGTGAAACACCATGACCAAAAGGTACCTGGGGAGGAAA
GGGTTCAAATGGCTTATACTTCCACATCACAAATCATCATCAAAGGAAGT
CAGGACAGGAACTCAAGCCAGGCAGGAGCCTAGAGGCAGTTGCTGCTGCA
GAAGCCATGGAGGGATGCTGCTTACTGGCTTGCTCCTCATGGCTTGCTCG
GCCTGCTTTCCTATAGAACCCAGGACCACCATGCATGATGAGCAGGACCC
TCTTACATCAATCACTAATTAAGAAAATGCCCTACAGCTGGATCTTTCAG
GGGCATTTTCTCAATTGAGGTTCCCTTCTCTAAGATGACTCTCGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no541_m05.b1 MSMg01no541_m05.b1 CHROMAT_FILE:
MSMg01no541_m05.b1 PHD_FILE: MSMg01no541_m05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:33 2005
         (546 letters)



>mm_chr1_36696775_36697720
          Length = 946

 Score =  793 bits (410), Expect = 0.0
 Identities = 437/446 (97%)
 Strand = Plus / Minus

                                                                       
Query: 3   ctaatgagcagtagaccaggtgttgaatcctgctttgatttctggagaaatgccctgcct 62
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ctaatgagcagtagaccgggtgttgaatcctgctttgatttctggagaaatgccctgcct 387

                                                                       
Query: 63  cgtgtggcacatgcatgtcacagtgtgtgtgtgtaaagaaggcaaggcactgggtaaggg 122
            ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 386 tgtgtggcacatgcatgtcacagtgtgtgtgtgtaaaggaggcgaggcactgggtaaggg 327

                                                                       
Query: 123 ccactttcttagattgtctttcatttcctgatcatacccaagtcttctggtctagatata 182
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 326 ccactttcttagattgtctttcatttcctgatcatacccaagtcttctagtctagatata 267

                                                                       
Query: 183 agagtgggaacaggagccattcaatcatgaccatatggtactagccagaaacatgacctt 242
           |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 266 agagtgggaacaagagccattcaatcatgaccgtatggtactagccagaaacatgacctt 207

                                                                       
Query: 243 agagcagcagttctcaacctttctcatgctgcaactctttgttcctcatgttgtggtgaa 302
           ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 206 agagcagcagttctcaaccttcctcatgctgcaaccctttgttcctcatgttgtggtgaa 147

                                                                       
Query: 303 ccccaccatgaaattatttcattgctacttcataactgtaattttactactgtgattagt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ccccaccatgaaattatttcattgctacttcataactgtaattttactactgtgattagt 87

                                                                       
Query: 363 aataatgtaaatatctgacctgtgagccctctgggggtcagaaccaacaggttgacaact 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  aataatgtaaatatctgacctgtgagccctctgggggtcagaaccaacaggttgacaact 27

                                     
Query: 423 gaaaaaaacaaaacattttctacctt 448
           ||||||||||||||||||||||||||
Sbjct: 26  gaaaaaaacaaaacattttctacctt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space:   501696
Effective search space used:   501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)