BAC Information

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BAC

Clone NameMSMg01-541O03
Chromosome1 (Build37)
Map Location 59,155,769 - 59,294,471
singlet/doubletdoublet
Overlap geneAls2cr4, Mpp4, Als2
Upstream geneAox1, Aox3, Aox4, Aox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11
Downstream geneAls2cr7, Fzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-541O03.T7 (MSMg01no541_o03.b1)MSMg01-541O03.TJ (MSMg01no541_o03.g1)
ACCAG607792AG607793
length763740
length of high quality
(start - end)		668 (50 - 717)573 (79 - 651)
definitionCHROMAT_FILE: MSMg01no541_o03.b1 PHD_FILE: MSMg01no541_o03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:43 2005CHROMAT_FILE: MSMg01no541_o03.g1 PHD_FILE: MSMg01no541_o03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,155,769 - 59,156,432)(59,293,899 - 59,294,471)
sequence
TTTTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAAGGCCATTCTTCCAGTGTCAGTTATTACGTTATTAACAT
AGACAGCTTTCTCCAGCTGCAATGTAAGGCTGCATTCTCTATGCTGTTAG
GAGCAAACCTAGACACTTAGCTAATACAAAGCTGCTACCTTACTCGTCTG
TATTTCAAGTCTGGTACAGATATAACTGAGTCCAAATCAAAGTACCACCG
AGACAGTACTGCTTTCTGGAAGACTGCTTCCTTGTTCATCCTTGATAGAA
TTCCTGAATTCTATGTCTGTTGTATAAGAGTCTGTTCCCAGCCTTTCAGG
TCACTAAAGGCCCCTCCACCTTTCTAAGCAGAAATATCACAACTGACCAA
CAGCTCTTTGGTGGAACTGAAAAGGGTTTAGTCTTTTAGAAAACATCACC
TGGCTATGCTGAGCCACGCGCAATGAAGGATACTCTCCCCATTTCAAAGC
TTGTATCCCTACTCACATCTGCAAAGCCACTTTTGCTGTGAAAAGTCCTC
ATGGACTCCAGGAATGAGAGGGGCCATGACTTAGCCAGCAACACCCCTAC
CCTGACAGCACCTTTCCCTACTCCTTGATGACATATTCAGATATGACAGG
CCTCAGCTCAACATCTCTGCAGTTGCTGCGAAGCAGACGATGAAGTACAC
TCCCAGCTGCTGCCGACATGTGGATCACTGCTAATCAGTGAGGACTCACA
CTGGCAGGAACGC

NNNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCCTGCTGCCTTCATCTC
ACAAATGTTGGGATTACAGACGTGTGCAGCCATGTTCTGATAGGTAAGAT
TTTCTCTTCATCTCTCGCAGTTTGAGGAGGTAACAAAACTTGCAGTAGCT
TCCATCCTCAAGCGCGGCCGATCGTTACCATGGAAACGCTTATTGAGTTA
GGTCCTTTCACTGAGTCTTCGGTTGCTTCTAAAGTGCGCCCGCCCTAGGA
CGATTGGTTCTGCCCTGACTAAATGGTTTGCCTGCAGTCGCTGACGCGTT
CGGAGCAATCTTGATCCCTGTCGGACGCCGTCACCGGCTCTTGCCTAGCT
CCACCCATTCTGCGGGCCCGCCTCTCCAGCCCGCCGCCGGAGGTCCCGCC
CCTACCTGGAGGCCCCGCCCCCATGAATCAGCTGATCTCGCGTACCCGCG
GTGCAGTCGGGCTCGCGCCGGGAGAAGAGCGCGGAGCTGCGGGAGCGTCA
GGTGAGCCCGCGCGGGTCCGGGCGGTCCTTGGGTTCGAAGGCGGGTCGGC
GGAGGTGCGGGAGCGCGCTGGGCTGGCCTGCGGGGACGGCGCCTGCCTGT
GAAGAGCTCCGGACGTGGTGGCTCGGGCCGGGTCCCACCCTCCGGGTCCC
AGCGCCCCACTGCCGTGGTCCGAGCTGAGTGGCATTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no541_o03.b1 MSMg01no541_o03.b1 CHROMAT_FILE:
MSMg01no541_o03.b1 PHD_FILE: MSMg01no541_o03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:43 2005
         (668 letters)



>mm_chr1_59155565_59156632
          Length = 1068

 Score = 1214 bits (628), Expect = 0.0
 Identities = 655/664 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaaggccattcttccagtgtcagttattacgttattaacatagacagctttctc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaaggccattcttccagtgtcagttattacgttattaacatagacagctttctc 264

                                                                       
Query: 65  cagctgcaatgtaaggctgcattctctatgctgttaggagcaaacctagacacttagcta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 265 cagctgcaatgtaaggctgcattctctatgctgttaggagcaaacctagacacttagtta 324

                                                                       
Query: 125 atacaaagctgctaccttactcgtctgtatttcaagtctggtacagatataactgagtcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atacaaagctgctaccttactcgtctgtatttcaagtctggtacagatataactgagtcc 384

                                                                       
Query: 185 aaatcaaagtaccaccgagacagtactgctttctggaagactgcttccttgttcatcctt 244
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaatcaaagtaccaccaagacagtactgctttctggaagactgcttccttgttcatcctt 444

                                                                       
Query: 245 gatagaattcctgaattctatgtctgttgtataagagtctgttcccagcctttcaggtca 304
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 445 gatagaattcctgaattctatgtctgttgtataagagtctgttcacagcctttcaggtca 504

                                                                       
Query: 305 ctaaaggcccctccacctttctaagcagaaatatcacaactgaccaacagctctttggtg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctaaaggcccctccacctttctaagcagaaatatcacaactgaccaacagctctttggtg 564

                                                                       
Query: 365 gaactgaaaagggtttagtcttttagaaaacatcacctggctatgctgagccacgcgcaa 424
           |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 565 gaactgaaaagggtttagtcctttagaaaacatcccctggctatgctgagccacgcgcaa 624

                                                                       
Query: 425 tgaaggatactctccccatttcaaagcttgtatccctactcacatctgcaaagccacttt 484
           ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 625 tgaaggatactttccccatttcaaagctcgtatccctactcacatctgcaaagccacttt 684

                                                                       
Query: 485 tgctgtgaaaagtcctcatggactccaggaatgagaggggccatgacttagccagcaaca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgctgtgaaaagtcctcatggactccaggaatgagaggggccatgacttagccagcaaca 744

                                                                       
Query: 545 cccctaccctgacagcacctttccctactccttgatgacatattcagatatgacaggcct 604
           |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 745 cccccaccctgacagcacctttccccactccttgatgacatattcagatatgacaggcct 804

                                                                       
Query: 605 cagctcaacatctctgcagttgctgcgaagcagacgatgaagtacactcccagctgctgc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cagctcaacatctctgcagttgctgcgaagcagacgatgaagtacactcccagctgctgc 864

               
Query: 665 cgac 668
           ||||
Sbjct: 865 cgac 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no541_o03.g1 MSMg01no541_o03.g1 CHROMAT_FILE:
MSMg01no541_o03.g1 PHD_FILE: MSMg01no541_o03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:43 2005
         (573 letters)



>mm_chr1_59293640_59294612
          Length = 973

 Score = 1054 bits (545), Expect = 0.0
 Identities = 566/573 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgatcctgctgccttcatctcacaaatgttgggattacagacgtgtgcagccatgttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 ctgatcctgctgccttcatctcacaaatgttgggattacagacgtgtgcagccatgttct 773

                                                                       
Query: 61  gataggtaagattttctcttcatctctcgcagtttgaggaggtaacaaaacttgcagtag 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 772 gataggtaagattttctcttcatttctcgcagtttgaggaggtaacaaaacttgcagtag 713

                                                                       
Query: 121 cttccatcctcaagcgcggccgatcgttaccatggaaacgcttattgagttaggtccttt 180
            |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 712 tttccatcctcaagcgcggcctatcgttaccatggaaacgcttattgagttaggtccttt 653

                                                                       
Query: 181 cactgagtcttcggttgcttctaaagtgcgcccgccctaggacgattggttctgccctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 cactgagtcttcggttgcttctaaagtgcgcccgccctaggacgattggttctgccctga 593

                                                                       
Query: 241 ctaaatggtttgcctgcagtcgctgacgcgttcggagcaatcttgatccctgtcggacgc 300
           || |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 592 ctgaatggtttgcctgcagtcactgatgcgttcggagcaatcttgatccctgtcggacgc 533

                                                                       
Query: 301 cgtcaccggctcttgcctagctccacccattctgcgggcccgcctctccagcccgccgcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 cgtcaccggctcttgcctagctccacccattctgcgggcccgcctctccagcccgccgcc 473

                                                                       
Query: 361 ggaggtcccgcccctacctggaggccccgcccccatgaatcagctgatctcgcgtacccg 420
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ggaggccccgcccctacctggaggccccgcccccatgaatcagctgatctcgcgtacccg 413

                                                                       
Query: 421 cggtgcagtcgggctcgcgccgggagaagagcgcggagctgcgggagcgtcaggtgagcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 cggtgcagtcgggctcgcgccgggagaagagcgcggagctgcgggagcgtcaggtgagcc 353

                                                                       
Query: 481 cgcgcgggtccgggcggtccttgggttcgaaggcgggtcggcggaggtgcgggagcgcgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 cgcgcgggtccgggcggtccttgggttcgaaggcgggtcggcggaggtgcgggagcgcgc 293

                                            
Query: 541 tgggctggcctgcggggacggcgcctgcctgtg 573
           |||||||||||||||||||||||||||||||||
Sbjct: 292 tgggctggcctgcggggacggcgcctgcctgtg 260


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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