MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-541P22
Chromosome	1 (Build37)
Map Location	4,362,052 - 4,362,161
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Xkr4, LOC100038975, LOC664792, LOC619785, Rp1h
Downstream gene	Sox17, LOC664830, LOC664838, LOC664853, LOC619596, EG619980, LOC100039121, LOC620009, Mrpl15, Lypla1, Tcea1, LOC619829, Rgs20, Atp6v1h, EG636659
Link	Open Mouse BAC browser

Click to get alignment info.

name	Xkr4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:497097 MGI:3528744
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100038975 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038975
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC664792 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:664792
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins pseudo : _no_value

name	LOC619785 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:619785
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Rp1h (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19888 MGI:1341105
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sox17 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20671 MGI:107543
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC664830 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:664830
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 4 Proteins pseudo : _no_value

name	LOC664838 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:664838
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC664853 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:664853
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	LOC619596 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:619596
definition	note : glioma tumor suppressor candidate region gene 2 pseudogene pseudo : _no_value

name	EG619980 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:619980 MGI:3644547
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins pseudo : _no_value

name	LOC100039121 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039121
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	LOC620009 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:620009
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 mRNAs, 379 ESTs, 8 Proteins pseudo : _no_value

name	Mrpl15 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27395 MGI:1351639
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lypla1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18777 MGI:1344588
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tcea1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21399 MGI:1196624
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC619829 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:619829
definition	note : high mobility group box 3 pseudogene pseudo : _no_value

name	Rgs20 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:58175 MGI:1929866
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Atp6v1h (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:108664 MGI:1914864
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG636659 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:636659 MGI:3644877
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 Proteins pseudo : _no_value

name	Xkr4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:59858538 GeneID:497097 MGI:3528744
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : X Kell blood group precursor related family member 4 transcript_id : NM_001011874.1

name	LOC100038975 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149233582 GeneID:100038975
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100038975 transcript_id : XM_001472020.1

name	Rp1h (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33468922 GeneID:19888 MGI:1341105
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : retinitis pigmentosa 1 homolog (human) transcript_id : NM_011283.1

name	Sox17 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802575 GeneID:20671 MGI:107543
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SRY-box containing gene 17 transcript_id : NM_011441.3

name	Mrpl15 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328269 GeneID:27395 MGI:1351639
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitochondrial ribosomal protein L15 transcript_id : NM_025300.2

name	Lypla1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31543132 GeneID:18777 MGI:1344588
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : lysophospholipase 1 transcript_id : NM_008866.2

name	Tcea1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254396 GeneID:21399 MGI:1196624
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transcription elongation factor A (SII) 1 transcript_id : NM_011541.3

name	Rgs20 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142372967 GeneID:58175 MGI:1929866
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : regulator of G-protein signaling 20 transcript_id : NM_021374.3

name	Atp6v1h (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142369636 GeneID:108664 MGI:1914864
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATPase, H+ transporting, lysosomal V1 subunit H transcript_id : NM_133826.3

name	Xkr4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:59858539 CCDS:CCDS14803.1 GeneID:497097 MGI:3528744
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : XK-related protein 4 protein_id : NP_001011874.1

name	LOC100038975 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149233583 GeneID:100038975
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472070.1

name	Rp1h (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33468923 CCDS:CCDS14804.1 GeneID:19888 MGI:1341105
definition	GO_component : GO:0005929 - cilium [Evidence IDA]; GO:0005625 - soluble fraction [Evidence IDA] GO_function : GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007601 - visual perception [Evidence IEA] codon_start : 1 note : oxygen-regulated protein 1 product : retinitis pigmentosa 1 homolog protein_id : NP_035413.1

name	Sox17 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755604 CCDS:CCDS14805.1 GeneID:20671 MGI:107543
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : SRY-box 17 protein_id : NP_035571.1

name	Mrpl15 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33468983 GeneID:27395 MGI:1351639
definition	GO_component : GO:0005762 - mitochondrial large ribosomal subunit [Evidence IEA] [Evidence ISS]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0003735 - structural constituent of ribosome [Evidence ISS] [Evidence IEA] GO_process : GO:0000002 - mitochondrial genome maintenance [Evidence TAS]; GO:0006412 - protein biosynthesis [Evidence ISS] codon_start : 1 note : ribosomal protein, mitochondrial, L7 product : mitochondrial ribosomal protein L15 protein_id : NP_079576.1

name	Lypla1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678760 CCDS:CCDS14806.1 GeneID:18777 MGI:1344588
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA] GO_process : GO:0006631 - fatty acid metabolism [Evidence IEA]; GO:0006629 - lipid metabolism [Evidence IEA] codon_start : 1 note : phospholipase 1a; lysophopholipase 1 product : lysophospholipase 1 protein_id : NP_032892.1

name	Tcea1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755728 GeneID:21399 MGI:1196624
definition	GO_component : GO:0005654 - nucleoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003702 - RNA polymerase II transcription factor activity [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IEA]; GO:0003746 - translation elongation factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006952 - defense response [Evidence IEA]; GO:0030218 - erythrocyte differentiation [Evidence IMP]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045893 - positive regulation of transcription, DNA-dependent [Evidence IDA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006354 - RNA elongation [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : transcription elongation factor A (SII) 1 protein_id : NP_035671.1

name	Rgs20 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625669 CCDS:CCDS14807.1 GeneID:58175 MGI:1929866
definition	GO_component : GO:0005794 - Golgi apparatus [Evidence TAS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005096 - GTPase activator activity [Evidence TAS]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence TAS]; GO:0009968 - negative regulation of signal transduction [Evidence IEA] codon_start : 1 note : regulator of G-protein signaling Z1 product : regulator of G-protein signaling 20 protein_id : NP_067349.2

name	Atp6v1h (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981588 CCDS:CCDS14808.1 GeneID:108664 MGI:1914864
definition	GO_component : GO:0000221 - hydrogen-transporting ATPase V1 domain [Evidence IEA]; GO:0000300 - peripheral to membrane of membrane fraction [Evidence IEA] GO_function : GO:0001671 - ATPase stimulator activity [Evidence IEA]; GO:0005488 - binding [Evidence IEA]; GO:0015078 - hydrogen ion transporter activity [Evidence IEA]; GO:0046933 - hydrogen-transporting ATP synthase activity, rotational mechanism [Evidence IEA]; GO:0046961 - hydrogen-transporting ATPase activity, rotational mechanism [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA] GO_process : GO:0006754 - ATP biosynthesis [Evidence IEA]; GO:0015986 - ATP synthesis coupled proton transport [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0015992 - proton transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : vacuolar ATP synthase subunit H; vacuolar proton pump H subunit; V-ATPase H subunit; vacuolar ATPase subunit H; ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H product : ATPase, H+ transporting, lysosomal, V1 subunit H protein_id : NP_598587.2

name	LOC619785 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:619785
definition	number : 5 pseudo : _no_value

name	LOC619785 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:619785
definition	number : 4 pseudo : _no_value

name	LOC619785 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:619785
definition	number : 3 pseudo : _no_value

name	LOC619785 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:619785
definition	number : 2 pseudo : _no_value

name	LOC619785 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:619785
definition	number : 1 pseudo : _no_value

name	LOC664838 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:664838
definition	number : 2 pseudo : _no_value

name	LOC664838 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:664838
definition	number : 1 pseudo : _no_value

name	LOC664853 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:664853
definition	number : 1 pseudo : _no_value

name	LOC664853 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:664853
definition	number : 2 pseudo : _no_value

name	LOC100039121 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039121
definition	number : 4 pseudo : _no_value

name	LOC100039121 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039121
definition	number : 3 pseudo : _no_value

name	LOC100039121 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039121
definition	number : 2 pseudo : _no_value

name	LOC100039121 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039121
definition	number : 1 pseudo : _no_value

name	EG636659 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:636659
definition	number : 2 pseudo : _no_value

name	EG636659 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:636659
definition	number : 1 pseudo : _no_value

name	(CDS detail)
type	STS
link
xref	UniSTS:128840
definition	standard_name : D1Mit475

name	(CDS detail)
type	STS
link
xref	UniSTS:125374
definition	standard_name : MHAa84a2.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:128586
definition	standard_name : D1Mit242.1

name	(CDS detail)
type	STS
link
xref	UniSTS:128585
definition	standard_name : D1Mit242

name	(CDS detail)
type	STS
link
xref	UniSTS:158773
definition	standard_name : 36.MMHAP82FRD12.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:270413
definition	standard_name : PMC122834P1

name	(CDS detail)
type	STS
link
xref	UniSTS:471102
definition	standard_name : Sox17

name	(CDS detail)
type	STS
link
xref	UniSTS:162931
definition	standard_name : RH126223

name	(CDS detail)
type	STS
link
xref	UniSTS:128794
definition	standard_name : D1Mit427

name	(CDS detail)
type	STS
link
xref	UniSTS:209785
definition	standard_name : RH127073

name	(CDS detail)
type	STS
link
xref	UniSTS:234064
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:207125
definition	standard_name : RH127028

name	(CDS detail)
type	STS
link
xref	UniSTS:207124
definition	standard_name : BB280152

name	(CDS detail)
type	STS
link
xref	UniSTS:163048
definition	standard_name : RH126340

name	(CDS detail)
type	STS
link
xref	UniSTS:178356
definition	standard_name : Tcea1

name	(CDS detail)
type	STS
link
xref	UniSTS:207123
definition	standard_name : AU022349

name	LOC664792 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149233581 GeneID:664792
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins product : similar to Solute carrier family 35, member E3 pseudo : _no_value transcript_id : XR_030515.1

name	LOC664830 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149233584 GeneID:664830
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 4 Proteins product : hypothetical LOC664830 pseudo : _no_value transcript_id : XR_030593.1

name	EG619980 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149233585 GeneID:619980 MGI:3644547
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins product : predicted gene, EG619980 pseudo : _no_value transcript_id : XR_030641.1

name	LOC620009 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149233586 GeneID:620009
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 mRNAs, 379 ESTs, 8 Proteins product : similar to pyruvate dehydrogenase (lipoamide) beta pseudo : _no_value transcript_id : XR_030608.1

clone name	MSMg01-301C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378O02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-345B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-412K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-513O20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521C13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-191H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-408D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-522J22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-346H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-260M08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367K10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-103B17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-103A07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-432C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-129G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-101B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098N17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-441I13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133K23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-105M15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-300N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-447I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-447I21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-372A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-521O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-346G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-113M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-373J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-147J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-280A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-541P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179O14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-300P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-316K14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-504B22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383D06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-410N04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466N11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-371O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-488G14
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-128C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359D23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078G12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-485J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-195E10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-275K08
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-410J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-261C06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318H07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543A01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125D20
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-129E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-186M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-541K19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-336F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-482E07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-472J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-498A12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-062E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082N01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-236L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101E15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264L06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-213L07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-161P22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-008B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-324C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017C09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029L23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310M05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-133A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257L11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-134F22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-281K07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-241N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341O04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008I17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087G15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-246O12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-268H03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-349F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117E23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-139O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-114F10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-015I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086I19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-254C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-229M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061D04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-293G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231L24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-348P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053A19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-046B14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-100B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-061A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180J16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-298N10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-058E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046P12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-153L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002A15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-034O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240I24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-277B20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-178K09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-299L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-228H22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-106D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194A21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020A15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-047H08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-119E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-336B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349N15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-261B22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-202E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336A02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-198E09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029E16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-056L09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-052K15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-210K13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041N06
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-541P22.T7 (MSMg01no541_p22.b1)	MSMg01-541P22.TJ (MSMg01no541_p22.g1)
ACC	AG607878	AG607879
length	863	1,036
length of high quality (start - end)	109 (61 - 169)	---
definition	CHROMAT_FILE: MSMg01no541_p22.b1 PHD_FILE: MSMg01no541_p22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:52 2005	CHROMAT_FILE: MSMg01no541_p22.g1 PHD_FILE: MSMg01no541_p22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:52 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	TTCTCCCTTTCTGTAATTCCCCGATTTATTATAGGGAGAGGATCCGCGGA ATTCTTCCTACTCTACTCTCTTTCCAATCTCCAGTACCATATAGTAATAA TAATTCTATTTTGGAAAAACAGTACCAAAATGTTTTTCTGAGACTTTTCA CTATGTTAAAAATTGAATGGATTGGCCCACATCCTGATTCTCTGGTTCCT TTTGGTTATGTTGTTCACTGATCCATCATTTTGCCAGGTGTGTATAATCT GAATTACCCATTTCAATTAGTTCTATTCCTTGCATTCATTCAATTGTCTT CTTCCATCTGTTTCTCTTTATCTTCTCCAAGTAATCCCCTTCTTTTGATT CCCCCTCTTACTTTGTGTTACTACTTTTCCCATTTAAATTATAGTCTTCT TCCTTTTCTACTTCTTTTATTTCTTTTCACCCTCATTTTTCCCCCTTCTA TTGCTCTTTACTTTCTTTTTATTTCCTTATTCAACCTTTTTATATCCCTT TCCTTCTAGTTACCTTCCTCCTTCCCTTCTTTTATGCCATTTCCTTTTTT TTTTTCTCAGCGGCGTTATATCTCCTTCTTTTCATTATATATCCCCTACT CCTCCACCCCTTTTTCATTTCTTTTCTTAACACACATACAATTCTTATTT TTATACTCTTATATCACCTTCGTCCTCTTGCCCCTCTTTATATTATCTTT ATCACTCCCATTCCGTTTTTTCCCCTATTGGCTTACATTTCCGTCTATAT GCTTCTTTTTCCCTCTTATCTTTCTCCTACTTGCTTATTCTTTTTCCCTC GTCTTCCTTGTCCCTCTTCTCCTTCTTGTATCCTTTGTTTTTTCCATCTC TCTTTTTTCTCTN	TTTTTCTTTTTTTTTTCCTTACACTCCTCTACCTTCCCTCCTTCATCCTT TGTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXTCACCTGACGAAACAGAATGACTGATAA GCACCTGAAAATAACGTTCAGCATCCTTAATCATCATGTAAATGCAAATC AAAACTTATCTTGAAATTCCATCTTCACACCCGTTCTAATGTCTGAATAT TAAAATTTCCGGGACTTCTAATGCTGGCTAGGCAGTTTTAAACATATTAA CTCTTCCCCCCTTTGTGTATTTTATTGCTATCCTCTGCACTAACTTTTTT GTACATTTTATATTTTATCGATTCTTTTTTTTAGCGGTCAACTATAATGT TTTTTCTTTTTCTCCCTTCTTTCCCCACGCCAGGATCTATTTTCCCCTTC TGTCATTCTTTTACTCCTCTTAGTATCTCTCCTATATTATGTTTTCTAAA AATTTTTATCCTCTGAGATACTTAATTAATTTTATTCTCTATAAAAACAT GGCCTGCTTTTTTTATTCGTTTTACTCTCTATCTTTCCTACATACAATAC CACTGCCTGTCATTTATTCCTTTCTGTTCCCTTTTTACCACTTAATCCTC ATTCTACTTTGTTCGTCCATTGTCGTACTCATTTTTAATTTCTCCCATTT ATGTTATATCCCTATCTAGTCTATCTTCTCTCGTCCATCGCTGTTCATTC CCTCTTACACTCCTTGTCTACCTGTATCCTGACCTCTCTTGTTTTCCACC TATAACACCCCATTAACACCCTTTCCCTGTGTTAATACTTTTATAATTGC CCCCCTCATCATTCAACTTGTTTTCAACCATAATATCTTCCTTTTTATTG TCATACCCTTAGATACTGTTTAAACTAAATTGCTCGCCCCTATTGCTCCT CTATTATATTATTACTTGCTTCTTCGTATACCATCTCTGATTGTCTCTTA ATTTCTAATCTGCTATACACACGCCCTGTCTTCGAG
quality values	Open. Hide. 9 9 9 9 9 9 10 9 9 9 8 8 6 6 8 8 13 10 10 10 13 11 10 10 6 7 8 8 6 6 10 9 9 11 10 10 10 12 13 17 12 14 15 22 21 11 11 11 10 10 19 19 10 12 21 15 15 15 18 12 14 19 27 37 42 42 42 35 35 35 42 32 23 13 10 10 21 23 43 42 42 28 28 25 25 28 37 37 46 46 44 42 35 35 35 37 42 47 47 47 47 43 43 43 44 46 48 48 48 42 32 28 17 17 28 28 32 32 32 24 24 24 19 26 23 14 14 15 28 32 39 37 37 36 39 39 40 30 18 18 14 15 19 32 31 37 21 22 14 14 14 24 32 37 33 37 28 28 28 28 33 32 37 37 24 16 12 11 10 12 11 12 11 12 12 15 18 23 25 25 24 12 15 13 28 28 28 23 19 18 11 11 11 10 10 11 12 12 12 18 12 11 11 10 10 10 10 10 10 10 10 11 14 18 11 11 11 15 15 15 12 11 11 11 11 11 11 11 12 20 22 12 11 11 11 11 8 8 13 12 16 12 14 9 8 8 10 8 7 8 9 12 10 10 10 13 10 15 15 17 10 11 11 11 11 10 10 8 6 6 6 8 8 8 8 9 9 9 11 9 9 9 8 8 8 8 6 6 9 15 12 11 8 8 6 6 8 8 8 8 8 10 9 10 10 10 10 10 10 10 13 8 9 10 8 8 8 10 10 8 8 8 8 8 8 12 8 8 8 8 7 7 8 10 6 6 8 8 10 8 10 8 8 8 10 6 6 8 8 8 11 12 12 10 10 10 8 8 8 8 10 10 10 6 6 8 8 8 8 8 8 8 8 8 10 8 8 8 8 8 9 10 10 11 10 10 10 14 14 14 12 9 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 8 8 8 10 8 8 8 8 8 8 8 8 8 8 8 13 13 13 12 9 6 6 6 8 6 6 8 8 12 10 10 10 12 12 17 14 10 10 9 9 8 8 11 10 10 11 12 12 15 15 9 9 9 15 14 10 10 11 17 13 10 8 8 8 8 8 11 9 8 8 8 8 8 9 10 8 8 8 8 6 7 14 10 10 8 8 6 6 8 8 6 6 8 8 8 8 8 8 8 8 8 11 12 13 10 10 10 10 9 8 8 8 8 8 10 8 8 8 8 10 9 9 11 11 8 8 7 8 8 9 10 10 13 10 11 10 13 11 16 18 24 19 23 14 13 14 9 9 9 10 10 10 10 9 9 10 9 12 15 11 6 6 6 6 8 8 8 11 10 10 10 10 13 10 9 8 6 6 6 8 6 8 7 7 8 8 8 8 6 6 6 8 8 8 8 12 8 8 10 11 16 16 19 19 19 16 11 11 11 11 8 8 6 6 10 8 11 8 8 8 8 10 10 11 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 10 10 17 15 10 15 8 10 8 8 7 7 8 8 12 10 13 8 8 8 12 10 10 8 8 8 10 10 9 9 8 8 8 9 9 8 8 6 7 8 8 8 8 8 8 8 11 11 11 13 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 12 14 19 24 21 21 16 10 11 10 12 8 8 8 8 8 10 10 9 10 10 9 10 11 11 8 8 8 8 8 10 10 10 8 8 8 7 10 6 6 8 8 8 8 8 8 8 10 8 8 10 11 8 8 8 10 8 10 10 12 17 8 10 10 10 9 10 11 10 8 8 10 10 10 13 13 18 23 21 16 10 8 8 8 8 8 10 10 10 8 9 9 9 11 11 10 11 13 15 10 10 9 10 8 8 8 8 8 10 8 8 8 8 8 8 8 11 12 11 10 12 12 15 10 10 10 12 10 10 6 9 9 9 8 8 9 8 10 10 8 8 8 10 8 9 3 0	Open. Hide. 9 9 15 13 11 11 11 22 16 18 21 19 23 21 10 9 13 10 10 9 12 10 10 8 8 8 6 7 10 8 10 10 9 9 9 9 11 10 10 11 13 13 13 10 10 8 8 8 6 8 8 8 8 8 8 13 10 9 9 12 10 10 12 10 10 9 9 9 9 9 10 12 12 12 17 14 10 10 11 11 11 9 8 8 8 8 10 10 22 22 32 30 30 28 29 24 28 28 28 42 42 39 43 30 13 12 11 8 8 8 12 11 8 12 18 18 17 17 21 21 24 20 28 28 28 34 30 17 15 8 8 8 10 17 17 17 13 19 16 19 16 16 11 19 17 15 10 9 9 12 12 22 28 34 20 21 19 15 11 11 10 10 11 15 15 13 13 10 10 11 16 16 28 28 39 39 46 34 34 29 22 17 17 18 19 10 9 9 9 9 13 10 14 14 19 19 20 22 11 11 11 11 9 9 10 8 8 8 8 10 12 14 16 10 12 16 25 16 15 14 11 11 12 12 14 10 10 10 12 9 9 9 9 9 9 12 12 13 15 15 21 10 8 8 6 6 8 6 6 8 8 12 8 8 8 10 8 8 8 8 8 8 8 8 8 8 10 8 8 8 8 8 8 8 8 10 8 10 11 11 10 8 10 10 10 10 10 10 9 10 10 11 11 11 9 11 11 17 11 12 11 11 11 11 9 9 10 9 16 13 11 8 8 6 6 8 8 8 8 8 8 8 8 8 8 11 9 9 10 10 8 8 8 8 8 8 9 10 10 10 10 9 10 9 11 9 12 10 8 8 8 10 10 11 13 10 10 11 11 11 13 16 12 10 10 8 8 8 8 8 8 10 10 10 9 9 9 9 13 8 8 8 8 8 8 8 8 8 8 8 8 8 8 13 10 10 8 8 8 8 8 9 9 10 9 10 10 10 12 11 12 7 7 10 8 11 8 10 10 8 8 8 9 9 10 8 8 8 8 8 8 12 9 8 8 8 8 8 8 8 13 13 10 8 8 8 8 8 9 9 8 8 8 11 10 8 8 8 10 11 10 8 8 8 8 8 8 10 10 13 10 10 11 11 10 10 8 8 10 8 8 8 8 8 8 8 10 10 10 8 7 7 8 10 10 8 8 8 10 8 8 8 8 10 8 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 10 8 8 8 8 8 8 8 10 17 14 9 9 9 13 10 9 10 10 13 10 10 10 8 8 8 8 11 9 10 9 9 9 9 10 10 15 20 15 12 10 13 10 8 6 10 6 6 6 7 10 8 8 8 8 18 13 13 11 8 8 8 8 8 8 12 8 8 6 6 10 8 10 8 8 10 8 10 10 10 10 11 8 8 8 8 8 6 6 7 7 8 8 8 13 8 11 11 12 12 15 9 10 8 8 8 8 8 10 8 8 12 8 10 12 11 11 12 15 12 12 8 8 6 7 10 8 8 6 7 8 8 8 8 8 10 11 11 11 10 10 10 9 11 9 10 9 7 7 8 6 6 8 8 8 8 8 8 8 7 6 8 8 8 8 10 10 10 10 10 8 8 10 8 8 8 8 10 9 8 8 8 8 10 10 11 10 8 8 8 8 8 9 10 12 11 8 8 6 6 8 15 10 11 8 8 8 8 8 8 9 9 9 10 9 10 12 8 8 6 6 8 8 8 8 8 8 10 10 12 10 12 10 8 8 8 8 8 8 8 8 10 10 7 7 9 10 8 6 6 8 8 6 6 6 6 8 8 9 9 8 8 8 8 8 8 8 8 8 9 11 15 12 10 12 10 8 8 12 14 8 8 8 8 9 17 10 8 8 8 8 8 8 8 10 10 10 8 8 13 13 13 6 6 6 10 9 9 9 9 9 8 8 6 6 8 8 15 13 8 8 6 6 8 8 10 8 7 7 8 8 13 13 8 8 8 8 6 6 6 6 8 8 8 8 8 10 8 6 6 10 10 11 8 8 6 6 10 10 8 13 17 11 11 10 10 10 6 6 6 6 10 6 8 8 8 8 8 8 8 10 8 8 8 8 8 8 8 10 9 9 9 11 6 6 6 6 6 12 8 8 8 8 8 7 9 8 8 8 8 8 9 10 10 9 9 11 15 15 9 9 9 9 8 8 8 8 10 10 10 6 6 6 10 10 9 10 11 11 11 8 8 8 6 10 6 7 10 10 9 9 9 14 12 12 11 9 7 7 7 8 8 10 15 10 10 8 7 7 8 8 8 8 8 8 8 8 8 8 8 8 8 8 13 8 8 8 8 8 8 8 8 6 6 6 7 8 8 8 9 8 8 8 8 8 8 8 8 6 6 8 6 6 6 6

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no541_p22.b1 MSMg01no541_p22.b1 CHROMAT_FILE:
MSMg01no541_p22.b1 PHD_FILE: MSMg01no541_p22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:52 2005
         (109 letters)



>mm_chr1_4361852_4362361
          Length = 510

 Score =  197 bits (102), Expect = 1e-55
 Identities = 108/110 (98%), Gaps = 1/110 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctactctctttcc-aatctccagtaccatatagtaataataattctattttggaaaaa 59
           |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ctctactctccttccaaatctccagtaccatatagtaataataattctattttggaaaaa 251

                                                             
Query: 60  cagtaccaaaatgtttttctgagacttttcactatgttaaaaattgaatg 109
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 cagtaccaaaatgtttttctgagacttttcactatgttaaaaattgaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 109
Length of database: 510
Length adjustment: 8
Effective length of query: 101
Effective length of database: 502
Effective search space:    50702
Effective search space used:    50702
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information