Query= MSMg01no542_b05.b1 MSMg01no542_b05.b1 CHROMAT_FILE:
MSMg01no542_b05.b1 PHD_FILE: MSMg01no542_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:59 2005
(721 letters)
>mm_chr1_170097759_170098879
Length = 1121
Score = 1386 bits (717), Expect = 0.0
Identities = 717/717 (100%)
Strand = Plus / Minus
Query: 5 gaattctcttcaccaaaacatctctatttggctgaatcaagctgagcttatttttctttg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 gaattctcttcaccaaaacatctctatttggctgaatcaagctgagcttatttttctttg 862
Query: 65 ccagaagatcaggataatctttggaaagttaaataagaactgacttttcagttttaaccc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ccagaagatcaggataatctttggaaagttaaataagaactgacttttcagttttaaccc 802
Query: 125 tctgcttactatatagttcgactcaggagccctgtgcagctatgtggcatagaaacattt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tctgcttactatatagttcgactcaggagccctgtgcagctatgtggcatagaaacattt 742
Query: 185 tgtacaatagttttacttgtacttttaataggggtgagaaagcaatcctacgcctgaaac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtacaatagttttacttgtacttttaataggggtgagaaagcaatcctacgcctgaaac 682
Query: 245 agtacagtgtcgcacattctgtgcgagcctcagagtactacagctggcttcagcctctgt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtacagtgtcgcacattctgtgcgagcctcagagtactacagctggcttcagcctctgt 622
Query: 305 cttccgtgccttatgtagcactattaattccaggtcttcatgatagatgaaggtaggata 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttccgtgccttatgtagcactattaattccaggtcttcatgatagatgaaggtaggata 562
Query: 365 aaaggtgctcactagggaacagcaaagcaggtcacccctgagtgccaactctaaatgatg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaggtgctcactagggaacagcaaagcaggtcacccctgagtgccaactctaaatgatg 502
Query: 425 actgtacattgtcacctagcccctgtgccccttgtctgaagcactcagagtattatccca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actgtacattgtcacctagcccctgtgccccttgtctgaagcactcagagtattatccca 442
Query: 485 tgatggggactaagtttggtcaatttagtgtcctctcctgaggagttagaatgagttctc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatggggactaagtttggtcaatttagtgtcctctcctgaggagttagaatgagttctc 382
Query: 545 attgatctctgtgtcgatgccaatatgtatttgtcgtccagggtaaccaaatgacctatc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attgatctctgtgtcgatgccaatatgtatttgtcgtccagggtaaccaaatgacctatc 322
Query: 605 ccacatagttttgcaaccagggccccatcttcctagggtcaggatactggcgcagctttc 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccacatagttttgcaaccagggccccatcttcctagggtcaggatactggcgcagctttc 262
Query: 665 aaagcaccagttcttcattcatgtaacaaaggtgcttctctgagaagctgctgcgtt 721
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagcaccagttcttcattcatgtaacaaaggtgcttctctgagaagctgctgcgtt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 721
Length of database: 1121
Length adjustment: 10
Effective length of query: 711
Effective length of database: 1111
Effective search space: 789921
Effective search space used: 789921
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no542_b05.g1 MSMg01no542_b05.g1 CHROMAT_FILE:
MSMg01no542_b05.g1 PHD_FILE: MSMg01no542_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:59 2005
(641 letters)
>mm_chr1_169904106_169905146
Length = 1041
Score = 1123 bits (581), Expect = 0.0
Identities = 627/647 (96%), Gaps = 8/647 (1%)
Strand = Plus / Plus
Query: 1 acatgatatacaatactggcagagactc--------gtgtgtatgtgtgtgtgtgtgtgt 52
|||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 193 acatgatatacaatactggcagagactcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 252
Query: 53 gtgtacacatttgcctttaagtttgtaaatatttcgtgcttgactattctgatagaaaag 112
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 253 gtgtacacatttgcctttaagtttgtaaatatttcatgcttgactattctgatagaaaag 312
Query: 113 aaagtctaaaactggtgcagagctggaaaataaaagaatgccccttccacagaaaggaaa 172
||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 313 aaaatctaaaactggtgcagagctggaaaataaaagagtgccccctccacagaaaggaaa 372
Query: 173 ctgaaaagaaaagaaacagtagtaaaaataaacaaaattgagaaggaagtgaatgtaacc 232
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ctgaaaagaaaagaaacaggagtaaaaataaacaaaattgagaaggaagtgaatgtaacc 432
Query: 233 acaaagccaagctcatcctcactagtctgtgtctagaaattgtaaagatttaattaaaac 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 acaaagccaagctcatcctcactagtctgtgtctagaaattgtaaagatttaattaaaac 492
Query: 293 agtgacagcagaaaccaaggttcatctcccaatatccctgcaccgtactgttgtactgtt 352
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 493 agtgacagtagaaaccaaggttcgtctcccaatatccctgcaccgtactgttgtactgtt 552
Query: 353 attttggcataatttgctgttgttgtttttttctttccttgatgaattgttttggtatct 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 attttggcataatttgctgttgttgtttttttctttccttgatgaattgttttggtatct 612
Query: 413 ttgttgaaaatgaatttacatatagaggcctccagcttgctctgatctatcaaagtcaat 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ttgttgaaaatgaatttacatatagaggcctccagcttgctctgatctatcaaagtcaat 672
Query: 473 atcacatttgttagatgactgtaatactcattaccaagttgaaaccccctcttattctta 532
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 atcacatttgttagattacagtaatactcattaccaagttgaaaccccctcttattctta 732
Query: 533 gttctactgatatttttattataaacattaattttttttataaatgtgtgttgaattttg 592
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 733 gttctactgatatttttattataaacattaatttttttaatgaatgtgtgttgaattttg 792
Query: 593 actacttttcctatctccacatagctgatcagataatttctatgttt 639
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 actacttttcctatctccacatagctgatcagataatttctatgttt 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
