NACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCCACACCATTTCCTGTATCTACCCCAGCGCTGAGTGCACAGTA
AAGGCTAAATAAATGTTTGTTGACTCAATTAATTTATCCTCATATCTCTA
CCTCTTCACTGTTAGCAGACTGCTGGGAGATATTCCCACAGAAGCCAGTT
CAGTGCTGTGGGATGAGCACTAGTATGGGGTACACATGGAACCCGACAGC
TTGTAGACGAGACACCCACTCCAGAAGCACTCCCAACATTTCCTGGTCAA
AAGTTACCTTGATCCTGCTGCATTCTTTCTAGAAAAATCTGCATCTTCAT
AAGAGCTGATCTTTAACTATCATCAGACTCTAGCGGCGGCATTTGTTTTG
TTTGGTTGCTATGCTCAGGCATGACTGCACCCATCTATCCTAGGTCTAAA
TTACACTAGCACCCACATAGCAAAGCTAACCTGGGCTCCAGGATTCCAGT
CTTTCCTGAGGCTACATGTACACCCCTGTAATGGTTTGAGTCTGAAGTGC
CCCCTGCAGGCTCATGTTGGAATACTTGGTCTCCAGTTTGTGGCACCAGT
TTGTAAACTGTGGAGTAGGCTGGCTGAAGTGGGGTTCACAGCTTATAGTC
TGGTTATAATCCTGCATAACACATGTCCCGGTAAGTTGCCATGTAAGTTG
TCTTCATCACAGGCTTCCAAAAGCTCACCTCCTGGGCATGGTGGACTGAG
AGCTATCTG

NACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCATG
AATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGAT
CATGTGGTTTTTGTCGTTGAGTTTGTTTATATAATGGATTACATTGATGG
ATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGG
TCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAAT
TTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGT
TCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTG
GCTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGTGAAA
TAGTTTGTGCAGAATTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACT
CTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTATTA
ATAACTGCTTCTATTTCTTTAGGTGATATGGGACTGTTTAGATGGTCAAC
TTGATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCA
TTTCGTCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTAGAAGGAT
CTGATGGTGTTTTGGATTTCTTCAGGATCTGTTGTTATGTCTCCCTTTTC
ATTTC

Query= MSMg01no542_b19.b1 MSMg01no542_b19.b1 CHROMAT_FILE:
MSMg01no542_b19.b1 PHD_FILE: MSMg01no542_b19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:02 2005
         (688 letters)



>mm_chr1_188064931_188066018
          Length = 1088

 Score = 1255 bits (649), Expect = 0.0
 Identities = 676/685 (98%), Gaps = 2/685 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattc-ccacaccatttcctgtatctaccccagcgctgagtgcacagtaaaggctaaat 63
           |||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 761 gaattcaccacgccatttcctgtatcta-cccagcgctgagtgcacagtaaaggctaaat 703

                                                                       
Query: 64  aaatgtttgttgactcaattaatttatcctcatatctctacctcttcactgttagcagac 123
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 acatgtttgttgactcaattaatttatcctcatatctctacctcttcactgttagcagac 643

                                                                       
Query: 124 tgctgggagatattcccacagaagccagttcagtgctgtgggatgagcactagtatgggg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tgctgggagatattcccacagaagccagttcagtgctgtgggatgagcactagtatgggg 583

                                                                       
Query: 184 tacacatggaacccgacagcttgtagacgagacacccactccagaagcactcccaacatt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tacacatggaacccgacagcttgtagacgagacacccactccagaagcactcccaacatt 523

                                                                       
Query: 244 tcctggtcaaaagttaccttgatcctgctgcattctttctagaaaaatctgcatcttcat 303
           |||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 522 tcctggtcaaaagcaaccttgatcctgctgcattttttctagaaaaatctgcatcttcat 463

                                                                       
Query: 304 aagagctgatctttaactatcatcagactctagcggcggcatttgttttgtttggttgct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 aagagctgatctttaactatcatcagactctagcggcggcatttgttttgtttggttgct 403

                                                                       
Query: 364 atgctcaggcatgactgcacccatctatcctaggtctaaattacactagcacccacatag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 atgctcaggcatgactgcacccatctatcctaggtctaaattacactagcacccacatag 343

                                                                       
Query: 424 caaagctaacctgggctccaggattccagtctttcctgaggctacatgtacacccctgta 483
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 342 caaagctaacctgggctccaggattccagtctttcctgaggttacatgtacacccctgta 283

                                                                       
Query: 484 atggtttgagtctgaagtgccccctgcaggctcatgttggaatacttggtctccagtttg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 atggtttgagtctgaagtgccccctgcaggctcatgttggaatacttggtctccagtttg 223

                                                                       
Query: 544 tggcaccagtttgtaaactgtggagtaggctggctgaagtggggttcacagcttatagtc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 tggcaccagtttgtaaactgtggagtaggctggctgaagtggggttcacagcttatagtc 163

                                                                       
Query: 604 tggttataatcctgcataacacatgtcccggtaagttgccatgtaagttgtcttcatcac 663
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 162 tggttataatcctgcataacacatgtcctggtaagttgccatgtaagttgtcttcatcac 103

                                    
Query: 664 aggcttccaaaagctcacctcctgg 688
           |||||||||||||||||||||||||
Sbjct: 102 aggcttccaaaagctcacctcctgg 78


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)