NAACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAGCAAGGGTGATCAGCGTCCTGGCCTCCAAGGGGACTCACA
AGAGAGTACACTCCCATAGATAGGTATAATTGTATACACAGACATTTAAA
ACTCTTAAAAAAGAAAACAAAAAACAAACTTCCTGCCAAGAAAGTTCTAC
CACCACCTCTGGGGAGGGGAGGGGAGGGCCGTGTGCCCCCAGGGTATATG
TGGATGTAGAGGTCAAAGGGCAACTAGATGCCTGTGCTTTCTGAGCCGTT
TCAGCCCAACCATCTCTGCTTCCACTTCCCCAGAAAAAATAGGGAACATT
ATTAATTCACCAGGACCCTGGAGCGATGACCTTCATACTGTAACAAAGGA
GAGTCTTTTTTTGTTTTTTGTTTTTTTTTTTTTTTGGTTTTGTTTTTGTT
TTTTTTTTTTTCAAGACAGGAGACAGGGTTTCTCTGTGTAGCCCTGGCTG
TCCTGGAACTCACTCTGCAGACCAGGCTGGCCTCAAACTCAGAAATCCGC
CTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCACCACCACGCCC
GGCGGAGAGTCTTTTATTATTCTTTTTTTAATTAAACTTTTTAATTTTTA
TGTTTTTAAACTTTGTTCTGTTTGGTTGTCTGCTTTTTTAAAAAAGGTTT
CTCTGTGTAAAACTGGGTGAAACTTCTTTTATTTTTTTTTTTTAAATAAT
TTTTGTTCACCCTTGTTTTATAAAAAGGTCTCTTA

NNCCCATGATAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTCACCCATTAGACCCTCGATGCAC
CTACGGAGTGGTCAGATGATAGGTTGGCGGGAACCATCACCATCACAGTG
CCAGGTGTTCTCTTTAAAGGGCATAGATGAGGGAGCCACGTGCTTTCTCA
GACTGGTATCTTTGGTTTGGTTTTTCTGATATGATTTTAATTTGCTTATA
GGAATCTACATACAGTCCCAGTTCACTCTAACAAGTTTATAGAGAGGACC
TTCTCTATACCCAGGAGTAAGTAATTTATCATCTGTGTTGTGTAGTCAGG
GTTAAGCAGATGGTGCTGTTCATACTTCCAGCCAGGCACAGAGTCATCTT
ACATCTGCAAACAGAATCTAAAGCTTCTTGTAAAAAGAAGTCTCTCAGCC
CGGCAGTGAGGTGAACACCTTTAATCCCAGCACCAGTGGGTCTCTGAGTT
CGAGGCCAGCCGGGTCTACAGAGCAAGTTCCAGGACAACTAAGGCCACAT
AAAGAAACCCTGTCTTAAAAAATCCAAACAAACCAAAACCCAAAACCTAC
CTCTCACCCTCCAGAAGGCAAGACACAATCTGAAAACAACAACAACCATG
ACAACAGAAACCCCTAACAACATTATGAACAAACCAGTACCCAGGAGCAC
TTGACTCTATCTGCATATGTATCAAAAGATGGCCTAGTCCGCCATCAATG
GAAAGAGTGGCCCATTGG

Query= MSMg01no542_b20.b1 MSMg01no542_b20.b1 CHROMAT_FILE:
MSMg01no542_b20.b1 PHD_FILE: MSMg01no542_b20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:02 2005
         (549 letters)



>mm_chr1_84869378_84870328
          Length = 951

 Score =  959 bits (496), Expect = 0.0
 Identities = 530/548 (96%), Gaps = 14/548 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagcaagggtgatcagcgtcctggcctccaaggggactcacaagaga--gtaca 62
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 205 gaattccagcaagggtgatcagcgtcctggcctccaaggggactcacaagagagtgtaca 264

                                                                       
Query: 63  ctcccatagataggtataattgtatacacagacatttaaaactcttaaaaaagaaaacaa 122
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 265 ctcccatagataggtataattgtatacacagacatttaaaacccttaaaaaagaaaacaa 324

                                                                       
Query: 123 aaaacaaacttcctgccaagaaagttctaccaccacctctggggaggggaggggagggcc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaacaaacttcctgccaagaaagttctaccaccacctctggggaggggaggggagggcc 384

                                                                       
Query: 183 gtgtgcccccagggtatatgtggatgtagaggtcaaagggcaactagatgcctgtgcttt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgtgcccccagggtatatgtggatgtagaggtcaaagggcaactagatgcctgtgcttt 444

                                                                       
Query: 243 ctgagccgtttcagcccaaccatctctgcttccacttccccagaaaaaatagggaacatt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgagccgtttcagcccaaccatctctgcttccacttccccagaaaaaatagggaacatt 504

                                                                       
Query: 303 attaattcaccaggaccctggagcgatgaccttcatactgtaacaaaggagagtcttttt 362
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 505 attaattcaccaggaccctggagcgatgaacttcatactgtaacaaaggagagtcttttt 564

                                                                       
Query: 363 ttgttttttgtttttttttttttttggttttgtttttgttttt-ttttttttcaagacag 421
           |||||||| |||||| |||||          |||||||||||| ||||||||| ||||||
Sbjct: 565 ttgttttt-gtttttgttttt----------gtttttgtttttgttttttttcgagacag 613

                                                                       
Query: 422 gagacagggtttctctgtgtagccctggctgtcctggaactcactctgcagaccaggctg 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gagacagggtttctctgtgtagccctggctgtcctggaactcactctgcagaccaggctg 673

                                                                       
Query: 482 gcctcaaactcagaaatccgcctgcctctgcctcccaagtgctgggattaaaggcatgca 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gcctcaaactcagaaatccgcctgcctctgcctcccaagtgctgggattaaaggcatgca 733

                   
Query: 542 ccaccacg 549
           ||||||||
Sbjct: 734 ccaccacg 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 951
Length adjustment: 10
Effective length of query: 539
Effective length of database: 941
Effective search space:   507199
Effective search space used:   507199
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)