CTCATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATCTGTTTGCCTCAATTAGGAAAGAACCAAGGAGCCATCTTCCT
CAGCCTTGTCTTATCAGTGCTCACAGCATATCCAGGTCATACAGAAAAGT
GGTAAAAGTGAGGGTATAGGCTTGCATAGCAAATCCAGGTGAGAATGTGG
TCCGGTAGATTATTACCTCATAATGGATTTTGCAAAATCTTGCTGGAGAT
CTAGAGCAATGCCTCAGAATGTTAGCGGAGGTATTGCACAACTTCCAGTG
CTGGGGTTTGGATCCCAGAGCTCATATAAAAGGGCAAGAGTACAGCACAT
ACCTGTAATCATTGTTTCAAGAAAAACAGAGATATTGGATTTATAGTTCT
CTGGCTTTCAGCCTCAATGGAAAAGTTTGCATCCCAGATTTATGGAAGTG
ATCTGCCTCTAAAGGAATATTTGGAGGGGAAACTTCTATCACCCTCTCTG
TTCATTGCAAGCATTTGTAGGCACAGTCACCAGCACATATGTGCACATGG
ATTCAAACATACTCTCATACGTATAGACAAATAAATATTTTTTTATATGT
GTAGGCAGACAGGCTGTGGTGGCATTTGACTTTAATACAAGCACTTGGAA
GGCAGAGGCAGACAGATCTCTGATTTCAAGGCCAGCCTTATCTACAGAGT
GGGTTCTAGGACAGCTAGGTCTACACAGAGAAACCTTGTCTTGAAACAAA
ATAAAAG

CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATTAAGACAGGTTTCCTCACTAG
GCCCAAAGAAATCAGGCAGACCTATAGAGCACAAATAAGCTTTATGCCTC
AGTCCAGCCTTTCTTTTTTATATTAATAACAGGAAGGTGATGTAATCTCC
CCCACAAGCCTGAAGCAGGCTGAGCCAGACTTTGATTTTGCTTACCACTA
AGGAGATTACTTAGGGTAGAGCCTGCTTCACTGGATCACTCTATTGTTCA
GCCACTGCCACTGCTGCTACCTGCTGGGAGTTGGCCTAGCTATTCTGGAG
ATTACACATGGTCACCTGCAGCTGGGGTCCAAGGATGATTTGGTGGGAAT
GGGCTTCCCCTCTCCTTTATAAAGCGTGTCTGCCATTAAAAATTGGAACC
TTGAGCAGACTAGCTTGTCTTGGTTCCATTATTTCTCTACCTGCCTAGGT
TCCCTCTTCTCTTCCAGTTCTAAGATGCCTCCCAGGCTCGAACCCGGACA
TGAGAGCCGCAGGCCGGCCCCAACACAGTCATCTATAGGATGGAGCACAG
GGCCCCCAATGGGGGAGCTAGAGAAAGTACCCAAGGAGTTGAAGGGGTCT
GCAAACCTATAGGTGGAACAACAATATGAACTAACCAGTACCTCCAGAGC
TCGTGTCTTTAGCTGCATATGTAACAGAAGATGGCCTGGTCGGACATCAT

Query= MSMg01no542_c08.b1 MSMg01no542_c08.b1 CHROMAT_FILE:
MSMg01no542_c08.b1 PHD_FILE: MSMg01no542_c08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:04 2005
         (712 letters)



>mm_chr1_114845203_114846314
          Length = 1112

 Score = 1299 bits (672), Expect = 0.0
 Identities = 693/700 (99%), Gaps = 2/700 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  tctgtttgcctcaattaggaaagaaccaaggagccatcttcctcagccttgtcttatcag 72
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 tctgtttgcctcaattaggaaagaaccaaggagccatcttcctcagccttgtcttatcag 702

                                                                       
Query: 73  tgctcacagcatatccaggtcatacagaaaagtggtaaaagtgagggtataggcttgcat 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tgctcacagcatatccaggtcatacagaaaagtggtaaaagtgagggtataggcttgcat 642

                                                                       
Query: 133 agcaaatccaggtgagaatgtggtccggtagattattacctcataatggattttgcaaaa 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 agcaaatccaggtgagaatgtggtccggtagattattacctcataatggattttgcaaaa 582

                                                                       
Query: 193 tcttgctggagatctagagcaatgcctcagaatgttagcggaggtattgcacaacttcca 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tcttgctggagatctagagcaatgcctcagaatgttagcggaggtattgcacaacttcca 522

                                                                       
Query: 253 gtgctggggtttggatcccagagctcatataaaagggcaagagtacagcacatacctgta 312
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 521 gtgctggggtttggatcccagagctcatataaaagggcaagaatacagcacatacctgta 462

                                                                       
Query: 313 atcattgtttcaagaaaaacagagatattggatttatagttctctggctttcagcctcaa 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 atcattgtttcaagaaaaacagagatattggatttatagttctctggctttcagcctcaa 402

                                                                       
Query: 373 tggaaaagtttgcatcccagatttatggaagtgatctgcctctaaaggaatatttggagg 432
           ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 401 tggaaaaatttgcatcccagatttatggaagttatctgcctctaaaggaatatttggagg 342

                                                                       
Query: 433 ggaaacttctatcaccctctctgttcat-tgcaagcatttgtaggcacagtcaccagcac 491
           |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 341 ggaaacttctatcaccctctctgttc-tctgcaagcatttgtaggcacagtcaccagcac 283

                                                                       
Query: 492 atatgtgcacatggattcaaacatactctcatacgtatagacaaataaatatttttttat 551
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 282 atatgtgcacatggattcaaacatactctcatacgtatagacaaataaatatttttttaa 223

                                                                       
Query: 552 atgtgtaggcagacaggctgtggtggcatttgactttaatacaagcacttggaaggcaga 611
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 222 atgtgtaggcagacaggctgtggtggcaattgactttaatacaagcacttggaaggcaga 163

                                                                       
Query: 612 ggcagacagatctctgatttcaaggccagccttatctacagagtgggttctaggacagct 671
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 ggcagacagatctctgatttcaaggccagccttatctacagagtgggttctaggacagct 103

                                                   
Query: 672 aggtctacacagagaaaccttgtcttgaaacaaaataaaa 711
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 aggtctacacagagaaaccttgtcttgaaacaaaataaaa 63


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1112
Length adjustment: 10
Effective length of query: 702
Effective length of database: 1102
Effective search space:   773604
Effective search space used:   773604
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)