BAC Information

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BAC

Clone NameMSMg01-542D02
Chromosome1 (Build37)
Map Location 168,721,294 - 168,721,958
singlet/doubletsinglet
Overlap genenone
Upstream geneCd247, Pou2f1, LOC665409, Dusp27, Gpa33, Mael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895
Downstream geneLOC622102, C030014K22Rik, Uck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542D02.T7 (MSMg01no542_d02.b1)MSMg01-542D02.TJ (MSMg01no542_d02.g1)
ACCAG608028AG608029
length766759
length of high quality
(start - end)		669 (45 - 713)670 (74 - 743)
definitionCHROMAT_FILE: MSMg01no542_d02.b1 PHD_FILE: MSMg01no542_d02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:08 2005CHROMAT_FILE: MSMg01no542_d02.g1 PHD_FILE: MSMg01no542_d02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTGATAGTTGTTTGTGATGCGTTAAACCATTTATCTCTATAATTA
CTAGATCTCTCATTTCATCAGGGTTAGAAACTGAAATCCTATCCTGTGTG
AGAGTATATTAGATAAATAGTAAAACTATGTATTAAAAGATACTCATCTT
AGTGTGAAAAGATCCCTGACACCCTTGTATAACTCCCACCCATTCCCACC
ATTGTATAATTCCCACCACCTGGGAAGAGGGGACAGGAAGAAAGACTTAC
AATATGTCCTCTGTTCCTAAAATAGAGTAACAGCCACTCACGCTTTCAAA
AAGAATAGGAATTTCTGGGTCACTCTCAGAATAGAAGAATGATTCAAAAT
GGACTCTTTTCTGTAGAGATTGGAGGAGAGGAGAGGAAAGGGGAATCCTG
AACAGACACTCTCTGTAGTAAACACTCTTCTCATTTCTGTGACTTTGTAT
CCCGTAGAAACAGCTTAATGGAGAAGAAACTTACAACAGTTTCCAGGTTT
CAGAGGGCTCCCTTCATGGCAGTTTGGCCCCATGCACTTGGAAAGAAAAT
CATAACAAGTGAGAGCCATGTGGCAGAAGCTGTTCTTCAGTGTTGATGAA
TGGAAAGCAGAAAGAGACTAGAGGAGGGAGCCGGGGGGACATGGTATATC
TCCAAGCTCATGTTCTCAGTGATTTATTTTCTCTTTAGTACCTGCCAATA
ATACTATCATGTTATN

CCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAGAAGTTGGATTCCAGAAAACCAAAC
AACTCTATTAAAATGGGGTACAGAGCTAAACTGAGGAATACCGAATGGCT
GGGAAGCACCTAAAAAAAAGTTCAATATCCTTAATCATCAGGGAAATGTA
AATCAAAACAACTTTGAAATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAACTCAGGTGACAGCAGATGCTGTCGAGGTAATGGAGAAAGAGGA
ACAGTCCTCCATTGCTAGTGGGGCTGCAAGCTGTTACAACCACTCTGGAA
ATCAGTTTGGTAGTTCCTCAGAAAATTGAACATAGTTCTACCAGAAGATC
CAGCAATACCTCTCCTGGGCATATACCCAGAAGATGCTCCAACATGTTCA
TAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCC
TCAACAGAGGAATGGATACAGAAAATGTGGTACATTACACAATGGAGAAC
TACACAGCTATTAAAAACAATGAGTTTATGAAATTCTTAGACAAATGGAT
GGATCTGGAGGATATCATCCTAAGTGAGGTAACCCAATCACAAAAGAACA
CATGATATGTACTCACTGATAAGTGGATATTAGCCCAGAAGCTCAGAATC
CTTCTTAGAAGTTGGAAGAAATACCCATGGAAGGAGTTACAGGGACTAAC
CTCAGAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_d02.b1 MSMg01no542_d02.b1 CHROMAT_FILE:
MSMg01no542_d02.b1 PHD_FILE: MSMg01no542_d02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:08 2005
         (669 letters)



>mm_chr1_168721090_168722158
          Length = 1069

 Score = 1247 bits (645), Expect = 0.0
 Identities = 660/665 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgatagttgtttgtgatgcgttaaaccatttatctctataattactagatct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 gaattctctgatagttgtttgtgatgcgttaaaccatttatctctataattactagatct 810

                                                                       
Query: 65  ctcatttcatcagggttagaaactgaaatcctatcctgtgtgagagtatattagataaat 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 809 ctcatttcatcagggttagaaactgaaatcctatcctgtgtgagagtatattagatgaat 750

                                                                       
Query: 125 agtaaaactatgtattaaaagatactcatcttagtgtgaaaagatccctgacacccttgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 agtaaaactatgtattaaaagatactcatcttagtgtgaaaagatccctgacacccttgt 690

                                                                       
Query: 185 ataactcccacccattcccaccattgtataattcccaccacctgggaagaggggacagga 244
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 689 ataactcccacccattcccaccattgtgtaattcccaccacctgggaagaggggacagga 630

                                                                       
Query: 245 agaaagacttacaatatgtcctctgttcctaaaatagagtaacagccactcacgctttca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 agaaagacttacaatatgtcctctgttcctaaaatagagtaacagccactcacgctttca 570

                                                                       
Query: 305 aaaagaataggaatttctgggtcactctcagaatagaagaatgattcaaaatggactctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aaaagaataggaatttctgggtcactctcagaatagaagaatgattcaaaatggactctt 510

                                                                       
Query: 365 ttctgtagagattggaggagaggagaggaaaggggaatcctgaacagacactctctgtag 424
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ttctgtagagtttggaggagaggagaggaaaggggaatcctgaacagacactctctgtag 450

                                                                       
Query: 425 taaacactcttctcatttctgtgactttgtatcccgtagaaacagcttaatggagaagaa 484
            |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 caaacactcttctcattcctgtgactttgtatcccgtagaaacagcttaatggagaagaa 390

                                                                       
Query: 485 acttacaacagtttccaggtttcagagggctcccttcatggcagtttggccccatgcact 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 acttacaacagtttccaggtttcagagggctcccttcatggcagtttggccccatgcact 330

                                                                       
Query: 545 tggaaagaaaatcataacaagtgagagccatgtggcagaagctgttcttcagtgttgatg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tggaaagaaaatcataacaagtgagagccatgtggcagaagctgttcttcagtgttgatg 270

                                                                       
Query: 605 aatggaaagcagaaagagactagaggagggagccggggggacatggtatatctccaagct 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aatggaaagcagaaagagactagaggagggagccggggggacatggtatatctccaagct 210

                
Query: 665 catgt 669
           |||||
Sbjct: 209 catgt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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