ACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCGGA
ATTCTCACCTGAGGTATCCCGAATGGCAGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTC
CACCTCACACCAGTCAGAATGGCTAAGATAAAAAATTCAGGTGACAGCAG
ATGCTGGCAAGGATGTGGAGAAAGAGGAACGCTCCTCCATTGTTGGTGGG
ATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGGGTTCCTCAGAA
AATTGGACATAGTACTACCGGAAGATCCAGCAATACCTCTTCTGGGCATA
TATTCAGAAGATTCCCCAACCGGTAAGAAGGACACATGCTCCACTATGTT
CATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCC
CCTCAACAGAGGAATGGATACAGAAAATGTGGAACATTTACACAATGGAG
TACTACTCAGCTATTGAAAAGAAAGAATTTATGAATTTCCTAGCCAAATG
GATGGACCTGGAGGGTATCATACTGAGTGAGGTAACCCAATCACAAAAGA
ACTCTCAAAATATGTACTCACTGATAAGTGGGTATTAGCCCCAAACCTAG
GATACCCAAGATATAAGATACAATTTGCTAAACACATGAAACTCAAGAGA
ACTAAGATCAAAGTGTGGACACTTAGCCCCTTCTTAGAATAGGAAACAAA
ACACCCATGGAGG

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGAAGAAGAATGCCCTCTGACTCA
TCTAAATAAAGCCTCTATGAACTCCCAGAGATGGAGGTGGCACAAAAGGG
TCCTCAGGGATCTACATCTTGTCATATGCAATACATATTTATTTTCAGCT
TAATAATTTTCTGTGCCTCTGGAAACTGTAAATGAGTGGGTCTCTGATTC
TCGTGCCTGCATTTGGTGTTCCTTTTTTTTTTTTTGAGGTTATATTTTCT
AACTTCTATGTGATGGTTTTTAATTTTATCTTACTCTACTTTCTTTTGTC
ATATTTGGTTGTTATCATTAGAAGCCTGTTATTTTCTAATGAGAGACATA
AAGAAAGTGGCTCTGGAGTTGAGGGGAGGTGGGGAAATGCAAAGTGTGAA
GGGAGAGGAAACTGGGATCAAGATGCATTATAAGAGGAAAGAATATAATT
TAAATAAAAGAGAAAATTAAAGATGAAATAAAATATAAACAAGATAAACA
TCAAAGGAAGCAAAGAGGTGAGTTTGATGTAGCTTAATTCATTTTATGTA
GTGATATGCGTTAATAAAATAATAAGTAGAATTTAGAAAAATAATAGGTA
TTTTTGTCTAATTTGACTTCTAGGGTTTTTTTTAATGTATTATTTTCACT
TAAAATATTGTGTTAATTATGGCTGGATTTTTCTACATTATTTTCCACAT
TAGCAAAT

Query= MSMg01no542_d08.g1 MSMg01no542_d08.g1 CHROMAT_FILE:
MSMg01no542_d08.g1 PHD_FILE: MSMg01no542_d08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:10 2005
         (677 letters)



>mm_chr1_143689542_143690618
          Length = 1077

 Score =  752 bits (389), Expect = 0.0
 Identities = 425/437 (97%), Gaps = 2/437 (0%)
 Strand = Plus / Minus

                                                                        
Query: 242  tttttaattttatcttactctactttcttttgtcatatttggttgttatcattagaagcc 301
            ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1077 ttttt-attttatcttactctactttcctttgtcatatttggttgttatcattagaagcc 1019

                                                                        
Query: 302  tgttattttctaatgagagacataaagaaagtggctctggagttgaggggaggtggggaa 361
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 tgttcttttctaatgagagacataaagaaagtggctctggagttgaggggaggtggggaa 959

                                                                        
Query: 362  atgcaaagtgtgaagggagaggaaactgggatcaagatgcattataagaggaaagaatat 421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958  atgcaaagtgtgaagggagaggaaactgggatcaagatgcattataagaggaaagaatat 899

                                                                        
Query: 422  aatttaaataaaagagaaaa-ttaaagatgaaataaaatataaacaagataaacatcaaa 480
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 898  aatttaaataaaagagaaaatttaaagatgaaataaaatataaacaagataaacaccaaa 839

                                                                        
Query: 481  ggaagcaaagaggtgagtttgatgtagcttaattcattttatgtagtgatatgcgttaat 540
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 838  ggaagcaaagaggtgagtttgatgtagcttaattcattttatgtagtgatatgcattaat 779

                                                                        
Query: 541  aaaataataagtagaatttagaaaaataataggtatttttgtctaatttgacttctaggg 600
            |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 778  aaaataataagttgaatttagaaaaataataggtatttttgtctaatttgacttttaggg 719

                                                                        
Query: 601  ttttttttaatgtattattttcacttaaaatattgtgttaattatggctggatttttcta 660
            ||||||| |||||||| |||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 718  tttttttaaatgtattgttttcacttaaaatattgtgctaattatggctgcatttttcta 659

                             
Query: 661  cattattttccacatta 677
            |||||||||||||||||
Sbjct: 658  cattattttccacatta 642


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)