Query= MSMg01no542_d21.b1 MSMg01no542_d21.b1 CHROMAT_FILE:
MSMg01no542_d21.b1 PHD_FILE: MSMg01no542_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:12 2005
(683 letters)
>mm_chr1_153984455_153985537
Length = 1083
Score = 1183 bits (612), Expect = 0.0
Identities = 665/688 (96%), Gaps = 9/688 (1%)
Strand = Plus / Plus
Query: 5 gaattcaacatctcctgtctgactagctgggtgagaggtgggaggagggagacttattat 64
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 196 gaattcaacatctcctgcctgactagctggacgagaggtgggaggagggagacttattat 255
Query: 65 ggaagagcaatagataaaagagagtcaacatcactgcacataagtactggcaacacccgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ggaagagcaatagataaaagagagtcaacatcactgcacataagtactggcaacacccgg 315
Query: 125 gtctctaccacccacaa---------gcttcttaagcatcattctttgaggttttctcaa 175
||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 316 gtctctaccacccacaacgcccacaagcttcttaagcatcattctttgaggttttctcaa 375
Query: 176 tatgcaccctcaaaacgaaaggcattgctctctccaaccagaccagaaccctcattagaa 235
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 376 tatgcaccctcaaaacgaaaggcattgctctctccaaccagaccataaccctcattagaa 435
Query: 236 acggcacctgtgctatctacccttcagtctatttttctagctctgggcattgaacccagg 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 acggcacctgtgctatctacccttcagtctatttttctagctctgggcattgaacccagg 495
Query: 296 gctttatacttgctaggcaaaccccctagcccttgagccaggtcccagattgacatcacc 355
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 496 gctttatacttgctaggcaaaccctctagcccttaagccaggtcccagattgacatcacc 555
Query: 356 ttcagatcagtaaggctcatagtcacagaggcactgtgcagagggtctgggctctctgag 415
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 556 ttcagatcagtaaggctcatagtcacagaggcactgtgcagagggtctgggctctccgag 615
Query: 416 agctcttacacggcacaaaggacttgaaggttaaggaatgttgggaaatctaagcagttt 475
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 agctcttacatggcacaaaggacttgaaggttaaggaatgttgggaaatctaagcagttt 675
Query: 476 tggaagacctgggttgtttttctttcactggattcctaaagtggtcttgggtctatatac 535
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 676 tggaagacctgggttgtttttcattcactggattcctaaagtggtcttgggtctatatac 735
Query: 536 tccacttgcatgaaagtgagcagctctatacaaggtccctgagattatactcagctctat 595
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tccatttgcatgaaaatgagcagctctatacaaggtccctgagattatactcagctctat 795
Query: 596 acacggtccctgattcataatgcggtggcaggatgggagtttagggatgcatctgctttc 655
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 796 acaaggtccctgattcataatgcggtggcaggatgggagtttagggatgcatctactttc 855
Query: 656 aagttctttttatctcgccttttcctgt 683
|||||||||||||||| |||||||||||
Sbjct: 856 aagttctttttatctctccttttcctgt 883
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space: 722129
Effective search space used: 722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_d21.g1 MSMg01no542_d21.g1 CHROMAT_FILE:
MSMg01no542_d21.g1 PHD_FILE: MSMg01no542_d21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:13 2005
(632 letters)
>mm_chr1_154140063_154141094
Length = 1032
Score = 1122 bits (580), Expect = 0.0
Identities = 619/632 (97%)
Strand = Plus / Minus
Query: 1 ctcgagggaaagagccttccgatagatggaggaggtgaaaagttccttggggtctgctgg 60
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 832 ctcgagggaaagagcctcccgatagatggaggaggtgagaagttccttggggtctgctgg 773
Query: 61 gattgagctgcctgcttccctctaccaagacaggtcctcaggtcaggctaaggactcccc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 gattgagctgcctgcttccctctaccaagacaggtcctcaggtcaggctaaggactcccg 713
Query: 121 ggctcaacggttcatttgttttccctcctcttgcctttgggttttgctattcccaaacgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 712 ggctcaacggttcatttgttttccctcctcttgcctttgggttttgctattcccaaatga 653
Query: 181 tgtagggttttgttttccagaggttcaactatcttcccttccatggtatttacaggctcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tgtagggttttgttttccagaggttcaactatcttcccttccatggtatttacaggctcc 593
Query: 241 tgtcctgccaggaaagggtcctcctgttactggtgttcaggggcaccgagcagggtcagc 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 592 tgtcctgccaggaaagggtcctcctgtttctggtgttcaggggcaccgagcagggtcagc 533
Query: 301 acccaagggctggtcttgtgttctacgcccacttagttgggtgagatgtcatggggtaca 360
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 532 acccaagggctggtcttgtgttctacacccacttagttgggtgagatgtcgtggggtaca 473
Query: 361 cttgtgactccatcctcaatgtccgagaagttgcaagtgtttcagtaacgatgctttttt 420
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 472 cttgtgactccatcctcaatgtccaagaagctgcaagtgtttcagtaacgatgctttttt 413
Query: 421 caaagctgtgacatctttccaaatattgtctgaggtgagaagcaagggaggaatgcacat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 caaagctgtgacatctttccaaatattgtctgaggtgagaagcaagggaggaatgcacat 353
Query: 481 gaccttgtgcatgctccatctatgccagactgtactaagttcctaaagtacatcagctct 540
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gatcttgtgcatgctccatctatgccagactgtactaagttcctaaagtacatcagctcc 293
Query: 541 cagcaatccagtgagcttgctattgaccaagattcaactgtggtttacctggatggtatg 600
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 292 cagcaatccagtgagcttgctattgaccaaggttcaactgtggtttacctggatggtatg 233
Query: 601 gaagtgaagggtcagggttcaactcaagttcc 632
||||||||||||||||||||||||||||||||
Sbjct: 232 gaagtgaagggtcagggttcaactcaagttcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
