Query= MSMg01no542_e21.b1 MSMg01no542_e21.b1 CHROMAT_FILE:
MSMg01no542_e21.b1 PHD_FILE: MSMg01no542_e21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:18 2005
(703 letters)
>mm_chr1_116230299_116231400
Length = 1102
Score = 1286 bits (665), Expect = 0.0
Identities = 695/717 (96%), Gaps = 20/717 (2%)
Strand = Plus / Minus
Query: 5 gaattccacaacttcatctgaaggccactaggagaagactggattccaagaatctgggac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 gaattccacaacttcatctgaaggccactaggagaagactggattccaagaatctgggac 883
Query: 65 aaagatacaaaaccccacaatcacagttatacatctattctaacaaggacataactagta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 aaagatacaaaaccccacaatcacagttatacatctattctaacaaggacataactagta 823
Query: 125 atagtgacaactcctgtgacaaacacattcaaaccattacaaatattattaacctggctg 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 822 atagtgacaactcctgtgacaaacacattcaaaccattacaaatattattaacccggctg 763
Query: 185 aaatcattaacccagctgaaatcgtatagactgctcaataagcattttgaaacccacctt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 aaatcattaacccagctgaaatcgtatagactgctcaataagcattttgaaacccacctt 703
Query: 245 catgttgacctcctcccacagctatcttccctctgaaataagaagaaaaatgaaccatgc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 catgttgacctcctcccacagctatcttccctctgaaataagaagaaaaatgaaccatgc 643
Query: 305 ctactggagacctgctgctacctcactatcagctttaatactcctgtccttccttggtat 364
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ctactgaagacctgctgctacctcactatcagctttaatactcctgtccttccttggtat 583
Query: 365 tagcaaagacaccccatgatcccaccatggctatagtcatccagctttcagaacatgatt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tagcaaagacaccccatgatcccaccatggctatagtcatccagctttcagaacatgatt 523
Query: 425 tgacttattctcttttcctacctcttccttcggtacaagtcaaatttgataagtaggagt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgacttattctcttttcctacctcttccttcggtacaagtcaaatttgataagtaggagt 463
Query: 485 aacacagaaaaaatgaataaacaaatctgtcagacagaaaaaaatagaatttattatagg 544
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 462 aacacagaaaaaatgaataaacaaatctgtcagacag-aaaaaatagaatttattatagg 404
Query: 545 ttttgattgtccaatttgtcacagtgcattcag-------------------attcacaa 585
||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 403 ttttgattgtccaatttgtcacagtgcattcagattcattagttcacacagcattcacaa 344
Query: 586 ttcagaggccatcactacacaaatgacaagtgatgttactataatttatcatgtgtcttt 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ttcagaggccatcactacacaaatgacaagtgatgttactataatttatcatgtgtcttt 284
Query: 646 ttttttcacatagtatatcaccattataaaaaattgtaacaactcatcaaataaata 702
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ttttttcacatagtatatcaccattataaaaaattgtaacaactcatcaaataaata 227
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1102
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1092
Effective search space: 756756
Effective search space used: 756756
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no542_e21.g1 MSMg01no542_e21.g1 CHROMAT_FILE:
MSMg01no542_e21.g1 PHD_FILE: MSMg01no542_e21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:18 2005
(673 letters)
>mm_chr1_116181735_116182806
Length = 1072
Score = 1102 bits (570), Expect = 0.0
Identities = 649/676 (96%), Gaps = 5/676 (0%)
Strand = Plus / Plus
Query: 1 atttccactgctttcctgctgcagttgtctccacctcagtctccactgtgccaccacact 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 atttccactgcttccctgctgcagttgtctccacctcagtctccactgtgccaccacact 258
Query: 61 gccctgtgctgagttgggtcaagctggtccagcaagaggaccactaggtaatgaggactg 120
|||||||||||||||||||||||| |||||||||||||| ||| |||||| |||||||||
Sbjct: 259 gccctgtgctgagttgggtcaagcaggtccagcaagaggcccattaggtagtgaggactg 318
Query: 121 tggcagagcttcagttagcatttcagaagagcagatctcttcccaagtgttacaactctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tggcagagcttcagttagcatttcagaagagcagatctcttcccaagtgttacaactctt 378
Query: 181 aggacagaagcactc-gaatgtttgagtagttctcacacccctttaatccttctggatat 239
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aggacagaagcactcaga-tgtttgagtagttctcacacccctttaatccttctggatat 437
Query: 240 gattcttatatacagttttggggtaggtcatggtctggcagcaggtgcttttcattgact 299
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 438 gattcttatatacagttttggggtaggtcagggtctggcagcaggtgcttttcattgact 497
Query: 300 tgatctgagagcatggggaacacttatttgtatgtggaagggcttagtg--ctgctccta 357
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 498 tgatctgagagcatggggaacacttatttgtatgtggaagggcttagtgtgctgctccta 557
Query: 358 aatgtctaatggccacatacttctctgaggggggctgagggaagatgtagatgcaacagg 417
||||||||||||||| | ||||||||||| |||||||||||| |||||||||| ||||||
Sbjct: 558 aatgtctaatggccatacacttctctgagtggggctgagggaggatgtagatgtaacagg 617
Query: 418 agcatggacccaaggggtgtggcagaacacttgcagacccttgcaggtgacagtaaccta 477
|||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 618 agcagggatccaaggggtgtggcagaacacttgcagtcccttgcaggtgacagtaaccta 677
Query: 478 ctaggtttctagggttctaaacctgagctcaaccatgagccaggctgcctaattacagtg 537
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 678 ctaggtctctagggttctaaaccagagctcaaccatgagccaggctgcctaattacagtg 737
Query: 538 tgctgccccacaattaattgcatctatgtatgttgggacataaattaaattgtttgtttt 597
||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||
Sbjct: 738 agctgccccacaattaattgcatccatgtatgttgggacattaatgaaattgtttgtttt 797
Query: 598 ccctgagggatctttagattaggttaaaaacactttctctttgattctcatactaaacta 657
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 798 ccctgagggatctttagattaggt-aaaaacactttctctttgattctcacactaaactg 856
Query: 658 cattataatactaatg 673
||||||||||||||||
Sbjct: 857 cattataatactaatg 872
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1072
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1062
Effective search space: 704106
Effective search space used: 704106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
