NNNTATACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTCAAGTGGAATAAGAACTGAGAACAGAAAAGCCACTA
GCCATGAGCATCCCCTGGGTCAGGTAGATGCTGTATTTCAAACAGATGAA
TACACACTCTCTGTGCCTTTGAATTACTACCCAAATGCCTCAGCTAGGAT
TCCTATCTGTTTCTGTCATAAGACATGTTGTTTTACAAACACAAACCAGC
ATACCAAGCAAAACTAAAGCAAATAAAACAAACAAACAAAATCAATAAAT
TTGTATTTGGTGGATGGAGTTTCAGTTTAACCTGGAGCCCACATCCTGCC
TCCTTTTTTTTTTTTTTTTTTTTTTGGGATCCAAACATTGCTTTAAAGCC
CTATTAATTTTCTTCCCTGAAAAGCCAAGCTACATTACCATCTGTAAGTT
CTGCAGTATTCATAGATATTCAGAATGATTTACTGTTAATACAGGATGCA
GAAATGTGACTTTTTTCAAATGAATTTTCTTTTTTCTTTCAACATGCTTT
TACTTTGGGTTTGTTTCATTATCATACCTGTACAACCCTCTGTGGATGAT
ACAATATGATTCTTATTTGTATATAGAAGTAGTTGCTTTTCAGAAACCAA
GAAGCCCATGTTAATTAGTATTGTATTTTTAGACTTCCAATGTACTTCCA
ATGAACAAATACAATAAATTAGTTTTGAGTTAGCT

ATGGACTATGAAGNTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTATAAGAATTCCTGAAGAAAAG
GCCACCTAGAGACTGCTCCACCTGGGGATTCACCCCATATACAGCCACCA
AGCCTGGATGCTATTGTGGATTCTGGGAAGTGCTTGCTGACAGAAACCTG
ATATGGCTGTTTCCTAAGAGGCTCTGCCAGAGCCTGACAAATACAGAGTC
ACAGCCAACCATTGGACTGAGCTTAGGGTCCCAGATGGAGGAGTTGGAGA
AGGTTCTGAAAGAGCTGAGGGGGTTTGTAGCCCCATGGAGGGAGCAACAG
TGCCAACTGGCCAGATGTCCTAGAGCTCCAGGTGACTGAACTACCAACCA
AAAAATACACATGGAGGGATCTGTGGCTCCAGCCACTCACACATGTGGCA
TAGTATGGTCTTGTTGGACATCAGTGGGAGGAGAAGCCCTTAGGCCTGAG
GGTTTTCGATGCCCCAGTGTAGGGAAATGCCAGGGAAGGAAGACTGGAGT
AAGTGGGTTGGTGGGGGAGAACCCTCATAGTGGCAGGGGAAGGGGCATTG
GGATAGGGGATTTCTAAAGGAAAGACCTGGAAAGGGGAAACATTTGAAAT
GCAAATAAAGAAAATATCCAATAAAAAAGAAAAGAAAAAACAGAATTTCT
AAAATTATACTACTAATAATTAAGCTCTTTAT

Query= MSMg01no542_k07.b1 MSMg01no542_k07.b1 CHROMAT_FILE:
MSMg01no542_k07.b1 PHD_FILE: MSMg01no542_k07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:45 2005
         (543 letters)



>mm_chr1_131684439_131685378
          Length = 940

 Score =  942 bits (487), Expect = 0.0
 Identities = 526/541 (97%), Gaps = 5/541 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcaagtggaataagaactgagaacagaaaagccactagccatgagcatcccct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcaagtggaataagaactgagaacagaaaagccactagccatgagcatcccct 264

                                                                       
Query: 65  gggtcaggtagatgctgtatttcaaacagatgaatacacactctctgtgcctttgaatta 124
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 265 gggtcaggtagatgctgtatttcagacagatgaatacacactctctgtgcctttgaatta 324

                                                                       
Query: 125 ctacccaaatgcctcagctaggattcctatctgtttctgtcataagacatgttgttttac 184
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 325 ctacccaaatgcctcagctaggattcctatctgtttctgtcataagacgtgttgttttac 384

                                                                       
Query: 185 aaacacaaaccagcataccaagcaaaactaaagcaaataaaacaaacaaacaaaatcaat 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct: 385 aaacacaaaccagcataccaagcaaaactaaagcaaataaaacaaacaaacaaattcaa- 443

                                                                       
Query: 245 aaatttgtatttggtggatggagtttcagtttaacctggagcccacatcctgcctcc--t 302
             || || ||||||||||||||||||||||| |||||||||||||||||||||||||  |
Sbjct: 444 --atgtgaatttggtggatggagtttcagttcaacctggagcccacatcctgcctccctt 501

                                                                       
Query: 303 tttttttttttttttttttttgggatccaaacattgctttaaagccctattaattttctt 362
           ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 502 tttttttttttttttttttttggtatctaaacattgctttaaagccctattaattttctt 561

                                                                       
Query: 363 ccctgaaaagccaagctacattaccatctgtaagttctgcagtattcatagatattcaga 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ccctgaaaagccaagctacattaccatctgtaagttctgcagtattcatagatattcaga 621

                                                                       
Query: 423 atgatttactgttaatacaggatgcagaaatgtgacttttttcaaatgaattttcttttt 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 atgatttactgttaatacaggatgcagaaatgtgacttttttcaaatgaattttcttttt 681

                                                                       
Query: 483 tctttcaacatgcttttactttgggtttgtttcattatcatacctgtacaaccctctgtg 542
           |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 682 tctttcaacatgcttttactctgagtttgtttcattatcatacctgtacaaccctctgtg 741

            
Query: 543 g 543
           |
Sbjct: 742 g 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 940
Length adjustment: 10
Effective length of query: 533
Effective length of database: 930
Effective search space:   495690
Effective search space used:   495690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)