BAC Information

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BAC

Clone NameMSMg01-542L10
Chromosome1 (Build37)
Map Location 136,295,873 - 136,433,788
singlet/doubletdoublet
Overlap geneCyb5r1, Adipor1, Klhl12, Rabif
Upstream geneSox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik
Downstream gene4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b, Ube2t, Lgr6, Ptprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064, Elf3, Rnpep, Timm17a, Lmod1, Tmem58, Ipo9, Nav1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542L10.T7 (MSMg01no542_l10.b1)MSMg01-542L10.TJ (MSMg01no542_l10.g1)
ACCAG608422AG608423
length774771
length of high quality
(start - end)		657 (46 - 702)680 (75 - 754)
definitionCHROMAT_FILE: MSMg01no542_l10.b1 PHD_FILE: MSMg01no542_l10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:50 2005CHROMAT_FILE: MSMg01no542_l10.g1 PHD_FILE: MSMg01no542_l10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,433,263 - 136,433,788)(136,295,873 - 136,296,552)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAAGGAAGTGGCAGGAATTTGAGTCCATGGACTTGGGTTCAAGTT
TGCTACCTTCAAGATGTTAGGGGACACATTTTTAAACTCTATTTCATGTT
TGGGCCTGGAATGTCAGACAGAGGAATGATTTTTAGGGTACCCACCATCT
GATCATACTGTTTCCTCAAATATCTGGAGCCCTAGGGCTGTGGTTTGCAA
CGCTAGCTGCTTCATTCAGGAAGGTTATAAAAAAACAAACTTGGACCTAC
TCTGGACCAGCTCCACAGAGGCTCAGGGTAAAACTGGAAACCATCAGTAG
TTCTTAAAAGCTGTCCCTCTCGAGACTGGAGAGACAGTACAACAGTTAAC
AGCACATTTTGCTCTTGCAGAGGACCCAAATCTGATGCCCTCTTCTGATC
TTGGAGGGCACTGTGCACCAGACACGCATGTGGTCCATGGGTACAAAGCC
GCCCAGGGATTCTGGTATAGCCCACGATAATCACATCTTGATCCATTGCT
CTGTTCTTTGTACCCTGGGAAGAGGAGGGAGTTAGGCAGCTTTCCATCAA
GTTCTTGGCAGTGTTCCTTAGAGCTCAGGCTTATCAGTCCATGTCTGCCC
TTACTGCCTATTGTCTTGTTGGCCCATGGGAAGCCTTGTGGTACATGGTC
CACCAGGATGGCCACAATTCCATTGCCGTGTATGTATGTCATCANGAGGA
AAGCTTGAGGCAGCCATGCCTACC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTTTTTATGTTGATAGTGACATGTA
CAGACCTTTCATCCATCACTGTATCTCAAACAGGAAACATCCCTCTGTTT
GGGAAATGTGTGAGAGACAGCATGGTCATCTTGGCAAACGAGCAGCCCCA
GTGTCTTGTGTCTATTACTTCCGGTTTCCTGCTTGTGCTCTCAGCAGAGC
TGAGTCTGTAACCCTAATGGAGTTCTGAGTTCTGGCAGTAGCAGCTATCT
ATTTAGTATCTTGCTCCTTGACAGGCATCACACTAAATAAGAAAATACCT
CAGTAGAACCCAGAATAACTCTATGAACCAAATGCCCAAAGATTATGATG
TACATTCATCTATTGATAAACAAAAGCAGAGGGATGGAGTAACAAGGCCA
CTAAGGGCTAGAGACATCCTTGTGTGGCACTACTGTAGTCCTTGGTGAGG
ACCCATACTTGGTAGGACGCTTGACTTGAACCAAAAGGAAGCCCATGATT
TTTAAAAGATATTTATTATTTATTTTGTGTATGTGTTTCGCCTCCATGTT
TGTATGTATGTTTGTATGTATGTGTGTGCACCACGTGTGTGTAGTGCCTG
AGGATGCCAGAAGAGGGCACTGGAACCCCTAGAGTTAGAGTCCCAGTCTC
AAGTGGTTAGAGCAGTAAGCTCTCTATGAAGCCATCTCTCCAGCCCCCTC
CTGACTGATTCTGATGAACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_l10.b1 MSMg01no542_l10.b1 CHROMAT_FILE:
MSMg01no542_l10.b1 PHD_FILE: MSMg01no542_l10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:50 2005
         (657 letters)



>mm_chr1_136433263_136434319
          Length = 1057

 Score = 1017 bits (526), Expect = 0.0
 Identities = 526/526 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaaggaagtggcaggaatttgagtccatggacttgggttcaagtttgctacctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gaattcaaaggaagtggcaggaatttgagtccatggacttgggttcaagtttgctacctt 467

                                                                       
Query: 65  caagatgttaggggacacatttttaaactctatttcatgtttgggcctggaatgtcagac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 caagatgttaggggacacatttttaaactctatttcatgtttgggcctggaatgtcagac 407

                                                                       
Query: 125 agaggaatgatttttagggtacccaccatctgatcatactgtttcctcaaatatctggag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 agaggaatgatttttagggtacccaccatctgatcatactgtttcctcaaatatctggag 347

                                                                       
Query: 185 ccctagggctgtggtttgcaacgctagctgcttcattcaggaaggttataaaaaaacaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ccctagggctgtggtttgcaacgctagctgcttcattcaggaaggttataaaaaaacaaa 287

                                                                       
Query: 245 cttggacctactctggaccagctccacagaggctcagggtaaaactggaaaccatcagta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 cttggacctactctggaccagctccacagaggctcagggtaaaactggaaaccatcagta 227

                                                                       
Query: 305 gttcttaaaagctgtccctctcgagactggagagacagtacaacagttaacagcacattt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 gttcttaaaagctgtccctctcgagactggagagacagtacaacagttaacagcacattt 167

                                                                       
Query: 365 tgctcttgcagaggacccaaatctgatgccctcttctgatcttggagggcactgtgcacc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 tgctcttgcagaggacccaaatctgatgccctcttctgatcttggagggcactgtgcacc 107

                                                                       
Query: 425 agacacgcatgtggtccatgggtacaaagccgcccagggattctggtatagcccacgata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 agacacgcatgtggtccatgggtacaaagccgcccagggattctggtatagcccacgata 47

                                                         
Query: 485 atcacatcttgatccattgctctgttctttgtaccctgggaagagg 530
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46  atcacatcttgatccattgctctgttctttgtaccctgggaagagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no542_l10.g1 MSMg01no542_l10.g1 CHROMAT_FILE:
MSMg01no542_l10.g1 PHD_FILE: MSMg01no542_l10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:50 2005
         (680 letters)



>mm_chr1_136295673_136296752
          Length = 1080

 Score = 1268 bits (656), Expect = 0.0
 Identities = 674/680 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttttatgttgatagtgacatgtacagacctttcatccatcactgtatctcaaacagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttttatgttgatagtgacatgtacagacctttcatccatcactgtatctcaaacagg 260

                                                                       
Query: 61  aaacatccctctgtttgggaaatgtgtgagagacagcatggtcatcttggcaaacgagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacatccctctgtttgggaaatgtgtgagagacagcatggtcatcttggcaaacgagca 320

                                                                       
Query: 121 gccccagtgtcttgtgtctattacttccggtttcctgcttgtgctctcagcagagctgag 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccccagtggcttgtgtctattacttccggtttcctgcttgtgctctcagcagagctgag 380

                                                                       
Query: 181 tctgtaaccctaatggagttctgagttctggcagtagcagctatctatttagtatcttgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 tctgtaaccctaatggagttctgagttctggcagtagcagctatctatttagtattttgc 440

                                                                       
Query: 241 tccttgacaggcatcacactaaataagaaaatacctcagtagaacccagaataactctat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccttgacaggcatcacactaaataagaaaatacctcagtagaacccagaataactctat 500

                                                                       
Query: 301 gaaccaaatgcccaaagattatgatgtacattcatctattgataaacaaaagcagaggga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaccaaatgcccaaagattatgatgtacattcatctattgataaacaaaagcagaggga 560

                                                                       
Query: 361 tggagtaacaaggccactaagggctagagacatccttgtgtggcactactgtagtccttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggagtaacaaggccactaagggctagagacatccttgtgtggcactactgtagtccttg 620

                                                                       
Query: 421 gtgaggacccatacttggtaggacgcttgacttgaaccaaaaggaagcccatgattttta 480
           |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 621 gtgaggacccatacttggtaggacacttgacttgaaccgaaaggaagcccatgattttta 680

                                                                       
Query: 481 aaagatatttattatttattttgtgtatgtgtttcgcctccatgtttgtatgtatgtttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaagatatttattatttattttgtgtatgtgtttcgcctccatgtttgtatgtatgtttg 740

                                                                       
Query: 541 tatgtatgtgtgtgcaccacgtgtgtgtagtgcctgaggatgccagaagagggcactgga 600
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tatgtatgtgtgtgcaccacatgtgtgtagtgcctgaggatgccagaagagggcactgga 800

                                                                       
Query: 601 acccctagagttagagtcccagtctcaagtggttagagcagtaagctctctatgaagcca 660
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 801 acccctagagttagagtcccagtctcaagtggttagagcagtaagctctctacgaagcca 860

                               
Query: 661 tctctccagccccctcctga 680
           ||||||||||||||||||||
Sbjct: 861 tctctccagccccctcctga 880


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space:   716900
Effective search space used:   716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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