NNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCTTTTCTGATAGCTGTACAACATTTAAAAAGGGCAGAGAC
AGACATTACTTGTCTAGTCCTTCTGCAATTTTGTGGGAGTTTATCTTTGG
GACAAATAAAGAGGTAAACTAAGCAATCAGGAATTAGTAATATTAGATTG
AAGGGACACACAGTATGACACAAAAAGGTATGACTTCTCACTCACAAATC
TTAGAAAATCTAGTATGTCATTATTGTTCCCTAAGCAATTAATTCTGGTC
ATAGAATACTCAAAAACTCAAGAGTGTATCATGAACAGTACTGTTTGTGG
ATCACCTAGCAATCCATCAGGATAACTTCTGTGAAGGATTTGTTTGAATT
CAATTAATCAAATGGAATACCTACTCTGAAGTAATGTGGGAACATTTCCT
GGCCTGAGGTCCTGGATAGTATAAAAGAATAAAGCTAGCCAAGAATAGGC
ACTCATCTTCTTTTGTTTCCTGACTGTGTAAACTGCCTTCATGACCTTTC
TGACATGATGGACTCTATGGACAGCTGTGAGCCAAAATAAATCCTTTCCC
CCAAAAATTCACACCTTATAGGGTATTTTGTCACCTCACTGAGAAAAATA
TGCAAGACAGATAATATTTATGCCTGTGGTTACCTGGGAATTCTCTCATT
AACAAAGGAGATACTGAGGTTATACATGTAGATCTAAGGTACAAGACTTT
CATAGATTTCATAAG

AACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAATGG
CCAAGAAGCACCTGAAAAAATTTTCAGCATTCCTAATCATCAGGGAAATG
CAAATCAAATCAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAA
GATAAAAAATTCAGGTGACAGCAGATTCTGGCGAGGATGTGGAGAAAGAG
GAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTAACTTGTAACTAC
TCTGGAACTCAGTCTGGTGGTTCCTCAAAAAATTGGACATACAGGAAGAT
TGGACTATAGGAGGATCCTGCAATACCTCTCCTGGGCATATATCCAGAAG
ATGTTCCACCCGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCC
TTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCTTCAACAGA
GGAATGGATACAGAAATTTCGGTACATTTACACGATGGAGTACTATTCAG
CTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTG
GAGGGCATCAACCTGAGTTAGGTAACTCAATCATAAAAGAACTCACATGA
TATGTACTCACTGATAAGTGGATATTAGCCTAGAAACTTAGAAAACCCAA
GATATAAGATGCAATGTGTGAAACATATGAAGCTCAGGAAGAAAGAAGAC
AAGGTGTAC

Query= MSMg01no542_l11.b1 MSMg01no542_l11.b1 CHROMAT_FILE:
MSMg01no542_l11.b1 PHD_FILE: MSMg01no542_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:50 2005
         (701 letters)



>mm_chr1_102243996_102245092
          Length = 1097

 Score =  934 bits (483), Expect = 0.0
 Identities = 516/529 (97%), Gaps = 4/529 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcttttctgatagctgtacaacatttaaaaagggcagagacagacattacttgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gaattctcttttctgatagctgtacaacatttaaaaagggcagagacagacattacttgt 466

                                                                       
Query: 65  ctagtccttctgcaattttgtgggagtttatctttgggacaaataaagaggtaaactaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 465 ctagtccttctgcaattttgtgggagtttatctttgggacaaataaacaggtgaactaag 406

                                                                       
Query: 125 caatcaggaattagtaatattagattgaagggacacacagtatgacacaaaaaggtatga 184
           | |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 405 ccatcaggaattagtagtattagattgaagggacacacagtatgacacaaaaagttatga 346

                                                                       
Query: 185 cttctcactcacaaatcttagaaaatctagtatgtcattattgttccctaagcaattaat 244
           |||    |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ctt----ctcacaaatcttagaaaatctagtatgtcattattgttccctaagcaattaat 290

                                                                       
Query: 245 tctggtcatagaatactcaaaaactcaagagtgtatcatgaacagtactgtttgtggatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tctggtcatagaatactcaaaaactcaagagtgtatcatgaacagtactgtttgtggatc 230

                                                                       
Query: 305 acctagcaatccatcaggataacttctgtgaaggatttgtttgaattcaattaatcaaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 acctagcaatccatcaggataacttctgtgaaggatttgtttgaattcaattaatcaaat 170

                                                                       
Query: 365 ggaatacctactctgaagtaatgtgggaacatttcctggcctgaggtcctggatagtata 424
           ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 169 ggaatacctactctgaagtaatgtgggaacatttcttgacctgaggtcctggatagtata 110

                                                                       
Query: 425 aaagaataaagctagccaagaataggcactcatcttcttttgtttcctgactgtgtaaac 484
           ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 109 aaagaataaagctagccaagaataggcactcatctccttttgttttctgactgtgtaaac 50

                                                            
Query: 485 tgccttcatgacctttctgacatgatggactctatggacagctgtgagc 533
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49  tgccttcatgacctttctgacatgatggactctatggacagctgtgagc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1097
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1087
Effective search space:   751117
Effective search space used:   751117
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)