Query= MSMg01no542_n14.b1 MSMg01no542_n14.b1 CHROMAT_FILE:
MSMg01no542_n14.b1 PHD_FILE: MSMg01no542_n14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:01 2005
(500 letters)
>mm_chr1_71560038_71560937
Length = 900
Score = 818 bits (423), Expect = 0.0
Identities = 476/497 (95%), Gaps = 9/497 (1%)
Strand = Plus / Plus
Query: 5 gaattctggggacccacgccttggtgtttatcaaaagggtgattgcgtcaggacaccaca 64
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctggggacccacgcctcggtgtttatcaaaagggtgattgcgtcaggacaccaca 264
Query: 65 agcaggtctttccagcacgggtgtaattaattatacagccaaggagaggtgtaggtgagg 124
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 265 agcaggtctttccagcacgggtataattaattatacagccaagtagaggtgtaggtgagg 324
Query: 125 tcaatgaactcagccggttccaatcagatccctagcccaggtcagaaagctgcacagggt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcaatgaactcagccggttccaatcagatccctagcccaggtcagaaagctgcacagggt 384
Query: 185 ttaaaggaagaagaatctgtaccagtgacttcatgaaggggcaacacacaggtttgggtc 244
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 385 ttaaaggaagaagaatctgtaccagcgacttcatgaaggggcaacacacaggtttgggtc 444
Query: 245 tcaggatgattatcagttgctctgagaaaaacaagcacggaaatctgagc-acggtggtg 303
|||||||||||||||||||||||| ||||||||||||| ||||||||||| | |||||||
Sbjct: 445 tcaggatgattatcagttgctctgggaaaaacaagcacagaaatctgagcga-ggtggtg 503
Query: 304 aaagcctacaaacccagctacatgggaaactgagacaggaggatcacgagttcaaggcct 363
|| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 504 aaggcctacaaacccagctacatgggaa-ctgagacaggagggtcacgagttcaaggcct 562
Query: 364 gcttgggactgagcatgagttaaaggccaatctgggcaatttagggtgaccctgtctcag 423
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 563 gcttgggactgagcatgagttaaaggccaatctgagcaatttagggtgaccctgtctcaa 622
Query: 424 agcaaaaaaaaaaaaaaaaaaaaaaatactgaaagggatgggaacaaatctcagtggtgg 483
||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||
Sbjct: 623 agcaaaaaaaaaaaataaaa------taccgaaagggatgggaacaaatctcagtggtgg 676
Query: 484 ggcctttacccagcatg 500
|||||||||||||||||
Sbjct: 677 ggcctttacccagcatg 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_n14.g1 MSMg01no542_n14.g1 CHROMAT_FILE:
MSMg01no542_n14.g1 PHD_FILE: MSMg01no542_n14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:01 2005
(147 letters)
>mm_chr1_71761614_71762160
Length = 547
Score = 281 bits (145), Expect = 2e-80
Identities = 145/145 (100%)
Strand = Plus / Minus
Query: 1 ttttgcccggtgtttagaagcacagaaaaatcctaactccaacaagatagaaacagatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ttttgcccggtgtttagaagcacagaaaaatcctaactccaacaagatagaaacagatta 286
Query: 61 ctcaaacatcatgaaaaaatgccctaaaatgtattcttgtgagggtgcagagatgattca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ctcaaacatcatgaaaaaatgccctaaaatgtattcttgtgagggtgcagagatgattca 226
Query: 121 atgattaagagcatttaaatgataa 145
|||||||||||||||||||||||||
Sbjct: 225 atgattaagagcatttaaatgataa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 147
Length of database: 547
Length adjustment: 8
Effective length of query: 139
Effective length of database: 539
Effective search space: 74921
Effective search space used: 74921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
