Query= MSMg01no543_e05.b1 MSMg01no543_e05.b1 CHROMAT_FILE:
MSMg01no543_e05.b1 PHD_FILE: MSMg01no543_e05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:34 2005
(171 letters)
>mm_chr1_77542161_77542730
Length = 570
Score = 284 bits (147), Expect = 2e-81
Identities = 162/167 (97%), Gaps = 1/167 (0%)
Strand = Plus / Plus
Query: 5 gaattcgcccatttacctttaaagatgatatgtgttgctaaggggagattaaaaaaaaaa 64
||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 205 gaattcgcccaggtagctttaaagatgatatgtgttgctaaggggagatt-aaaaaaaag 263
Query: 65 aataagagaacagctagcggtcgctgtagcgatggcaaagagctatgaataagggggccg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aataagagaacagctagcggtcgctgtagcgatggcaaagagctatgaataagggggccg 323
Query: 125 cacgggacctgggaatgtacatgacaaaaattggtcaccatggcaac 171
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cacgggacctgggaatgtacatgacaaaaattggtcaccatggcaac 370
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 570
Length adjustment: 8
Effective length of query: 163
Effective length of database: 562
Effective search space: 91606
Effective search space used: 91606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no543_e05.g1 MSMg01no543_e05.g1 CHROMAT_FILE:
MSMg01no543_e05.g1 PHD_FILE: MSMg01no543_e05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:34 2005
(644 letters)
>mm_chr1_77706524_77707567
Length = 1044
Score = 1176 bits (608), Expect = 0.0
Identities = 636/646 (98%), Gaps = 4/646 (0%)
Strand = Plus / Minus
Query: 1 acaccacgccaacgaggaaagtaactaaaagtcaactgtcccg-tttttattaacgctgg 59
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 844 acaccacgccaacgaggaaagtaactaaaagtcaactgccccgttttttattaacgctgg 785
Query: 60 atccccttaagcacagacatgatacgtttttcacagtttgcttctaaataaaaagaaaaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 atccccttaagcacagacatgatacgtttttcacagtttgcttctaaataaaaagaaaaa 725
Query: 120 taatcaaatttagaattaagtaaattgctttagcctgccatttaaagacagcacaagtaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 taatcaaatttagaattaagtaaattgctttagcctgccatttaaagacagcacaagtaa 665
Query: 180 tctaattagcggcactcctgaggagtaaatgtgagtgaacccagaaattgaatttggaga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tctaattagcggcactcctgaggagtaaatgtgagtgaacccagaaattgaatttggaga 605
Query: 240 ccggcatccagcaagccccgcatcagcacctctgagagaaaagccaaataaaagggactt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ccggcatccagcaagccccgcatcagcacctctgagagaaaagccaaataaaagggactt 545
Query: 300 ttttttttgaacttgccaaatcctgaaaagtataaaacaaagtaggaatgatgtgcaaat 359
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 544 ttttttt--aacttgccaaatcctgaaaagtataaaacaaagtaggaatgacatgcaaat 487
Query: 360 gcaaaaagtctgcaaagagtctgagtccataccaagccatctcagaacagagagctggtc 419
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 486 gcaaaaagtctgcaaagagtctgagtccataccaagccatctcaggacagagagctggtc 427
Query: 420 gcatccccccgggagaaaacagagccatcttcacggtgttgagtacagcctcacattctg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gcatccccccgggagaaaacagagccatcttcacggtgttgagtacagcctcacattctg 367
Query: 480 taaatgcacagtgtttagattgacttgatgccgttagtg-tttatgaaacatctcgtacc 538
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 366 taaatgcacagtgtttagattgacttgatgccgttagtgttttatgaaacatcgcgtacc 307
Query: 539 ctttgagcctccctaactattctaggcaccacccttcaggccaatatagactttgatctg 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ctttgagcctccctaactattctaggcaccacccttcaggccaatatagactttgatctg 247
Query: 599 gtgcggttgcccagacaagaatcagcagtggctgttgagggctgag 644
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 atgcggttgcccagacaagaatcagcagtggctgttgagggctgag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
