BAC Information

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BAC

Clone NameMSMg01-543E07
Chromosome1 (Build37)
Map Location 136,295,874 - 136,296,132
singlet/doubletsinglet
Overlap genenone
Upstream geneSox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik
Downstream geneCyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b, Ube2t, Lgr6, Ptprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064, Elf3, Rnpep, Timm17a, Lmod1, Tmem58, Ipo9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543E07.T7 (MSMg01no543_e07.b1)MSMg01-543E07.TJ (MSMg01no543_e07.g1)
ACCAG608844AG608845
length749737
length of high quality
(start - end)
259 (63 - 321)243 (86 - 328)
definitionCHROMAT_FILE: MSMg01no543_e07.b1 PHD_FILE: MSMg01no543_e07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:35 2005CHROMAT_FILE: MSMg01no543_e07.g1 PHD_FILE: MSMg01no543_e07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTATGTCCTTATTATTTGTTCGCTAATCGACTCACTATTCCAAGAGGAT
CCGCGGAATTCATTTTTTATCTAGATAGTGACATGTACAGACCTTTCATC
CATCACTGTATCTCAAACAGGAAACATCCCTCTGTTTGGGAAATGTGTGA
GAGACAGCATGGTCATCTTGGCAAACGAGCAGCCCCAGTGTCTTGTGTCT
ATTACTTCCGGTTTCCTGCTTGTGCTCTCAGCAGAGCTGAGTCTGTAACC
CTAATGGAGTTCTGAGTTCTGGCAGTAGCAGCTATCTATTTAGTATCTTG
CTCCTTGACAGGCATCACACTTAATAAGAAAATACCTCAGTAGAACCCTG
AATAACTCTATGAACCAAATGCCCAAAGATTATGATGTACATTCATCTAT
TGATAAACAAAAGCATAGGGATGGAGTAACAAGGTCACTAAGGGCTAGAG
ACATCCTTGTGTGGCACTACTGCAGTCCTTGGTGAGTACCCATACTTGGT
AGGACTCTTGACTTGAACCAAAATGAAGCCCACTCATTTTAACAGATTTT
TATTATTTATTTTGTGTATGTGTTTCGCCCTCCTCTTCTGCATGCATGTT
TCGCATGTATGTGGTGTGCCCCACCTTGTGGTGTAACGCCCTGAAGTAGC
CCCCAATGATGTTTTCTGGTAACCCCTTATAACTCATATATCCCCGCTCC
TTAATGTGGTTTACGAGCCATCTTTCTTTCTCCTATTTTACCTCTCCCC
CCTTTTTTTCGATGATATGGGTAGGCCTGGGCGGCGCCTGTTTCAACAAA
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGAGCT
ACACAGAGAAACCCTGTCTCAAAAAAAAGGAAAAAAAAAAAAAAAAAAAA
AAGCTGTACACAATAGCATGAATACTCTCCTGCATAAGATGAGATAACTG
AGTTTGAAGCCAGCCTGGGCTATAGAAAAATTAATCTTGGCACACCCCTT
TAATCCCAGCACTCATGGCAGTAGAGGCAATTGGATCTCTGAGTTCAAAG
CCAGCCTAGTCTACAGAGTTCCAGGGCAGCCAGAGCTATAGAGGAAAAAG
TCTTGAAAAACTAAAAAGATAAATTAGTCTTTAAAAACAGAAAGAAGAGA
AAGCCACTGGGTGCCGTGGCTTCTCCTGAGGCAGAAGCAGACAGAGCTTC
ATGCCTGCAGGACGAGTTTCATACCAGACTGGGCTGCAAAGTTAGATCAT
GTCTCCATTTCCTTATTCTTAATAAATGATCACTAACTAAAGTCCTTCAT
TGTCTAGGCTCAAATCCTAGTTCCACCACATACAATCTCTTTCCCTTCAA
CTTCAGGATGTATAGATGGGCCAGCATTATTCTGCCTTTATAACCAAGCT
AAAAAAAACTCTGAAAAATAGCTTGGGTCCAGGGATAACGCAATATATGA
CAAATGTCCCCCCCAATCCACGGTAAATTTTTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_e07.b1 MSMg01no543_e07.b1 CHROMAT_FILE:
MSMg01no543_e07.b1 PHD_FILE: MSMg01no543_e07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:35 2005
         (259 letters)



>mm_chr1_136295674_136296332
          Length = 659

 Score =  470 bits (243), Expect = e-137
 Identities = 255/259 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttttatctagatagtgacatgtacagacctttcatccatcactgtatctcaaacagga 60
           |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttttatgttgatagtgacatgtacagacctttcatccatcactgtatctcaaacagga 260

                                                                       
Query: 61  aacatccctctgtttgggaaatgtgtgagagacagcatggtcatcttggcaaacgagcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacatccctctgtttgggaaatgtgtgagagacagcatggtcatcttggcaaacgagcag 320

                                                                       
Query: 121 ccccagtgtcttgtgtctattacttccggtttcctgcttgtgctctcagcagagctgagt 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccccagtggcttgtgtctattacttccggtttcctgcttgtgctctcagcagagctgagt 380

                                                                       
Query: 181 ctgtaaccctaatggagttctgagttctggcagtagcagctatctatttagtatcttgct 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 ctgtaaccctaatggagttctgagttctggcagtagcagctatctatttagtattttgct 440

                              
Query: 241 ccttgacaggcatcacact 259
           |||||||||||||||||||
Sbjct: 441 ccttgacaggcatcacact 459


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space:   162500
Effective search space used:   162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)