Query= MSMg01no543_e24.b1 MSMg01no543_e24.b1 CHROMAT_FILE:
MSMg01no543_e24.b1 PHD_FILE: MSMg01no543_e24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:38 2005
(712 letters)
>mm_chr1_188437196_188438307
Length = 1112
Score = 1085 bits (561), Expect = 0.0
Identities = 615/653 (94%), Gaps = 32/653 (4%)
Strand = Plus / Minus
Query: 4 ggaattcatgggtaaaacattttccacatttatccctctgaaaggctatgttatatgtga 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ggaattcatgggtaaaacattttccacatttatccctctgaaaggctatgttatatgtga 568
Query: 64 caacattccaattttgaggcacgacttgtgccaatccacacaggcaattagagctgacac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 caacattccaattttgaggcacgacttgtgccaatccacacaggcaattagagctgacac 508
Query: 124 attccatgggctatgggtcaagtgctgaaagaaacccacaaaggaaaactttaccaaagg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 attccatgggctatgggtcaagtgctgaaagaaacccacaaaggaaaactttaccaaagg 448
Query: 184 aatccaccgaaggcatgattaggggttcagagtgctgggatcctctactgtcttagttgt 243
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 447 aatccaccgaaggcatgattaggggttcggagtgctgggctcctctactgtcttagttgt 388
Query: 244 tccttttgcctatcccctatcccatgagtggtggcttgttggatgctgtggactacatct 303
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 387 tccttttgcctatcctctatcccatgagtggtggcttgttgaatgctgtggactacatct 328
Query: 304 cagtgtgattgatagtagtggggcaatatggccatggtccatcgaagctgcacctgcaga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cagtgtgattgatagtagtggggcaatatggccatggtccatcgaagctgcacctgcaga 268
Query: 364 gcatggagatgctgaagaagaaggaatcagttaaacatgttacgtcatggccggaaaagg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gcatggagatgctgaagaagaaggaatcagttaaacatgttacgtcatggccggaaaagg 208
Query: 424 tggctcccacctgctgccagggaaggtggcacacatccaccatcctagtatgtgggagat 483
|||| ||||||||||||||||||||||||||||||
Sbjct: 207 tggc--------------------------acacatccaccatcctagtatgtgggagat 174
Query: 484 ------aggacagtcttaaatttgttaatttttaaagatattcaaatttaaaagcaaatc 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 tgagataggacagtcttaaatttgttaatttttaaagatattcaaatttaaaagcaaatc 114
Query: 538 atattttgcttggacagcctgaagaaggcatgaggaatgtttatgagcagagcatctgtg 597
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 atattttgcttggacagcttgaagaaggcatgaggaatgtttatgagcagagcatctgtg 54
Query: 598 tttcagatacaatgtaaaatacaatctctgcacgttttctctggtctcatata 650
|||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 53 tttcagatacaatgtaaaatacaatctctgcacgttctctctggtctcatata 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1112
Length adjustment: 10
Effective length of query: 702
Effective length of database: 1102
Effective search space: 773604
Effective search space used: 773604
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no543_e24.g1 MSMg01no543_e24.g1 CHROMAT_FILE:
MSMg01no543_e24.g1 PHD_FILE: MSMg01no543_e24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:38 2005
(680 letters)
>mm_chr1_188390660_188391739
Length = 1080
Score = 1263 bits (653), Expect = 0.0
Identities = 674/681 (98%), Gaps = 2/681 (0%)
Strand = Plus / Plus
Query: 1 attgtatgaagaaaaatctattttaaatttttaaaaaatttaaaaagattgaaaaacaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgtatgaagaaaaatctattttaaatttttaaaaaatttaaaaagattgaaaaacaag 260
Query: 61 ataaaatgaacatcctattttgtaagctgctccacccagtgggcttccctcccttttttt 120
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 ataaaatgaacatcctattttgtaagctgctccacccagtaggcttccctccctttttt- 319
Query: 121 gttgcatattgaatctcagagagctggcaaacaatgtgctacaatgccctgcatggagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gttgcatattgaatctcagagagctggcaaacaatgtgctacaatgccctgcatggagtg 379
Query: 181 ggtcagttaagactcagtgccatgccttgtgcccttctccacattctgagagactgttca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggtcagttaagactcagtgccatgccttgtgcccttctccacattctgagagactgttca 439
Query: 241 catttttttctttcccacggccaacatgaggaaaatggactgtgggtcagataatgtaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 catttttttctttcccacggccaacatgaggaaaatggactgtgggtcagataatgtaag 499
Query: 301 caacagaccacaagatgattgccaactatgtaaccatccgatccactccaaaggaaaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 caacagaccacaagatgattgccaactatgtaaccatccgatccactccaaaggaaaaaa 559
Query: 361 ttcattaacgttaacactgaatgcgaaccgcttgtttggatgtccagatgtcggaaagcg 420
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 560 ttcattaacgttaacactgaatgcgaactgcttgtttggacgtccagatgtcggaaagcg 619
Query: 421 ctgcatcctgaatagctgagatctcgcagttctttcccatcgtccttcctgattttgact 480
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 620 ctgcatcctgaatagctgagatctctcagttctttcccatcgtccttcctgattttgact 679
Query: 481 gaaagtcaagtttcaggaaaattctttcccattactgtgtactgatcacatcacgaaagc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gaaagtcaagtttcaggaaaattctttcccattactgtgtactgatcacatcacgaaagc 739
Query: 541 atttaaaaatccgactc-gtttcctatacgaagaaatggaaggcacaaccacaaagattt 599
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 740 atttaaaaatccgactccgtttcctatacgaagaaatggaaggcacaaccaaaaagattt 799
Query: 600 gtgtaaatgtcaccgattgttattcgaagctgtgctcagcaggctggaggattactgcaa 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 gtgtaaatgtcaccgattgttattcgaagctgtgctcagcaggctggaggattactgcaa 859
Query: 660 gcaagcaagcacacttcctac 680
|||||||||||||||||||||
Sbjct: 860 gcaagcaagcacacttcctac 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space: 716900
Effective search space used: 716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
