Query= MSMg01no543_g13.b1 MSMg01no543_g13.b1 CHROMAT_FILE:
MSMg01no543_g13.b1 PHD_FILE: MSMg01no543_g13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:46 2005
(492 letters)
>mm_chr1_4775898_4776790
Length = 893
Score = 882 bits (456), Expect = 0.0
Identities = 484/494 (97%), Gaps = 3/494 (0%)
Strand = Plus / Minus
Query: 1 taaaaataaaggtttatttgagttagaaaaagctgcttattaaattgtctcaccttcact 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 693 taaaaataaaggtttatttgagttagaaacagctgcttattaaattgtctcaccttcact 634
Query: 61 atataactgatagagcttggtaggagcaattctccagcaagacagtggagcagaaaaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 633 atataactgatagagcttggtaggagcaattctccagcaagacagtggaacggaaaaaga 574
Query: 121 atataaaaatgaacacattgttttctatattgcttgtattaagacaagttttaaaaatca 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 573 atataaaaatgaacacattgttttctatattacttgtattaagacaagttttaaaaatca 514
Query: 181 tttaatttggagagttaaatatatgtttggcagtttaagttcattagctttgaatcctat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tttaatttggagagttaaatatatgtttggcagtttaagttcattagctttgaatcctat 454
Query: 241 ctataccatctgctgttgacagctgggtcgatctgataggcat--aaccacacctcgctt 298
||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 453 ctataccatctgctg-tgacagctgggtcgatctgataggcataaaaccacacctcgctt 395
Query: 299 ctagcatggttgtttatatgaatctagtaaggctaactttaactcagtgtctggcatacc 358
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 394 ctagcgtggttgtttatatgaatctagtaaggctaactttaactcagtttctggcatacc 335
Query: 359 ccaggagctaagtatgccccaccccccatcgttaactgcaaggcacgctattaggttgaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ccaggagctaagtatgccccaccccccatcgttaactgcaaggcacgctattaggttgaa 275
Query: 419 cctaattagacaattaattctagagccaggcactgtaacagttgaattatcagagtctca 478
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 274 cctaattagacaattaattctagagccaggcactgtaacagttgaattaccagagtctca 215
Query: 479 aagcttgaacctgt 492
||||||||||||||
Sbjct: 214 aagcttgaacctgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 893
Length adjustment: 10
Effective length of query: 482
Effective length of database: 883
Effective search space: 425606
Effective search space used: 425606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_g13.g1 MSMg01no543_g13.g1 CHROMAT_FILE:
MSMg01no543_g13.g1 PHD_FILE: MSMg01no543_g13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:46 2005
(602 letters)
>mm_chr1_4637802_4638803
Length = 1002
Score = 1118 bits (578), Expect = 0.0
Identities = 596/602 (99%)
Strand = Plus / Plus
Query: 1 acgaatgagattggctgaattcaaagctagagaacacaacaaagtcggttctgtaccttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acgaatgagattggctgaattcaaagctagagaacacaacaaagtcggttctgtaccttc 260
Query: 61 tccaggttttgaccttgacaaaactctacattttggcaacctttgtttctcagaataacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccaggttttgaccttgacaaaactctacattttggcaacctttgtttctcagaataacc 320
Query: 121 taggtatatgcagtcagtagtcaactctttacatattaattctgtactcatttgtaaatt 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 taggtatatgcagtcagtagtcaactctttacatactaattctgtactcatttgtaaatt 380
Query: 181 taaagctaactgaatcctacttaagaccaaaattcatgtaaacttaccaagtttaaataa 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 taaagctaactgaatcctacttaagaccaaaattcatgtaaacttaccaactttaaataa 440
Query: 241 gtacgagttttttaaagtcttggttttattttgattattaaaaatttaagtcatcaaaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtacgagttttttaaagtcttggttttattttgattattaaaaatttaagtcatcaaaat 500
Query: 301 aatatataataaatgccttttaaatatgcatgatatcttctgaaactaaaagtaatatgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatatataataaatgccttttaaatatgcatgatatcttctgaaactaaaagtaatatgc 560
Query: 361 actcaaccagtttttaaaatctatttggaacataaaacataatagaagtagaaaaaatct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actcaaccagtttttaaaatctatttggaacataaaacataatagaagtagaaaaaatct 620
Query: 421 cttatgaagtcctctgtgaaaggaaattataacaagttcctgattagacaggaaccacac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttatgaagtcctctgtgaaaggaaattataacaagttcctgattagacaggaaccacac 680
Query: 481 aatctccaagggagaatatgcagcttaactgtggcctcatagaatgaattggatagtatt 540
||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||| ||
Sbjct: 681 aatctccaagggagaatatacagcataactgtggcttcatagaatgaattggatagtgtt 740
Query: 541 ccttctgtttccattttgtggaatagtttgaaaagcattggtattatgtcttctttgaag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccttctgtttccattttgtggaatagtttgaaaagcattggtattatgtcttctttgaag 800
Query: 601 gt 602
||
Sbjct: 801 gt 802
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space: 587264
Effective search space used: 587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
