Query= MSMg01no543_g15.b1 MSMg01no543_g15.b1 CHROMAT_FILE:
MSMg01no543_g15.b1 PHD_FILE: MSMg01no543_g15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:47 2005
(690 letters)
>mm_chr1_47370394_47371482
Length = 1089
Score = 1311 bits (678), Expect = 0.0
Identities = 687/690 (99%), Gaps = 1/690 (0%)
Strand = Plus / Minus
Query: 1 ttaagatgcattggttcttttagttttctcactacagttggtctgacacaagaaaaacag 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 889 ttaagatgcattggttcttttagttttctcactacagttgatctgacacaagaaaaacag 830
Query: 61 tctgaaggttgttactacccttgagttaaacaggaaagaaaatataaacatgtctgcttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 tctgaaggttgttactacccttgagttaaacaggaaagaaaatataaacatgtctgcttc 770
Query: 121 tggcatacaaatcgagttgacctaaagacatttagaaaatgaccaggtggaaaatctgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 tggcatacaaatcgagttgacctaaagacatttagaaaatgaccaggtggaaaatctgag 710
Query: 181 cagaggtaaagaagggacatttaggaacagagaaaaacacaaagagctcttgctctcagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 cagaggtaaagaagggacatttaggaacagagaaaaacacaaagagctcttgctctcagc 650
Query: 241 tcagccaagaggcaatgggaaaccaggatcaaattcagagcaggagactggcacacccaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 649 tcagccaagaggcaatgggaaaccaggatcaaattcagagcaggagactggcacaaccaa 590
Query: 301 aaaagtaagtcactagccccaaacctaactttgagatgtgcaagatctgagtcatttact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 aaaagtaagtcactagccccaaacctaactttgagatgtgcaagatctgagtcatttact 530
Query: 361 actcaacatcccatgaagaaaatgcagagtaatgacaaaagttttcaaactctaaaatac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 actcaacatcccatgaagaaaatgcagagtaatgacaaaagttttcaaactctaaaatac 470
Query: 421 ttcagtcacttgctatttgatatgtataagaatcaaacttatttgctctttttttcaggg 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 469 ttcagtcacttgctatttgatatgtataagaatcaaacttatttgctc-ttttttcaggg 411
Query: 481 ctttcaaatgtctaatacatgagaaagggagcaagctatggaagatacagctgaaagatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ctttcaaatgtctaatacatgagaaagggagcaagctatggaagatacagctgaaagatc 351
Query: 541 atggcacagcgtgatcaagagacttgtcagaggagtcaggtccagttccaggccatgtgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 atggcacagcgtgatcaagagacttgtcagaggagtcaggtccagttccaggccatgtgt 291
Query: 601 gaccatcacacagtggtgtctctacttttcatgaggttcatttcccaaatatttatactg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gaccatcacacagtggtgtctctacttttcatgaggttcatttcccaaatatttatactg 231
Query: 661 gaactatgtcctagaatttatatcaaaatt 690
||||||||||||||||||||||||||||||
Sbjct: 230 gaactatgtcctagaatttatatcaaaatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1089
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1079
Effective search space: 733720
Effective search space used: 733720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_g15.g1 MSMg01no543_g15.g1 CHROMAT_FILE:
MSMg01no543_g15.g1 PHD_FILE: MSMg01no543_g15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:47 2005
(611 letters)
>mm_chr1_47169664_47170674
Length = 1011
Score = 1160 bits (600), Expect = 0.0
Identities = 609/612 (99%), Gaps = 2/612 (0%)
Strand = Plus / Plus
Query: 1 ttcactttgtatgaagatttctgactgactttgacaagctgaaataataaatccctgggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcactttgtatgaagatttctgactgactttgacaagctgaaataataaatccctgggg 260
Query: 61 ataaagaaaggataatttgttttgtgaaggaaaactattcaaaggataatgcaaaaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaagaaaggataatttgttttgtgaaggaaaactattcaaaggataatgcaaaaaaaa 320
Query: 121 aa-gttagctatacagaaatatcttctaaaatatattgttttgcctcaggaagttataaa 179
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagttagctatacagaaatatcttctaaaatatattgttttgcctcaggaagttataaa 380
Query: 180 actataccacctgtagatagcaaacacagtctagggcaatctctggaatccaccttcaaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actataccacctgtagatagcaaacacagtctagggcaatctctggaatccaccttcaaa 440
Query: 240 caacccaagacaaagacaggtaagaagagttatctaaaaggagtaggtaaaaagttagac 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caacccaagacaaagacaggtaagaagagttatctaaaaggagtaggtaaaaagttagac 500
Query: 300 agacatgagttccttctaagtcatttgcctcccaaaccagtattcacagaatgcatggtg 359
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 agacatgagttccttctaagtcatttgcctcccaaaccagtactcacagaatgcatggtg 560
Query: 360 taaagagatttatattttaatggaaaattatatatgccctactttgatctcagtgattat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaagagatttatattttaatggaaaattatatatgccctactttgatctcagtgattat 620
Query: 420 aagagagatgaaaaaaatgaagagaatttgactacgatccataaaaaagcagcaggttaa 479
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagagagatgaaaaaa-tgaagagaatttgactacgatccataaaaaagcagcaggttaa 679
Query: 480 aagtttaggcattggaatttagaggggagtttcaaggatcataattattaagttttcagg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aagtttaggcattggaatttagaggggagtttcaaggatcataattattaagttttcagg 739
Query: 540 ggaaacataactcctagcttcaggcaaaaatggtttacaatggaatgataaacacatata 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ggaaacataactcctagcttcaggcaaaaatggtttacaatggaatgataaacacatata 799
Query: 600 ctctactctcca 611
||||||||||||
Sbjct: 800 ctctactctcca 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
