BAC Information

Click to search

BAC

Clone NameMSMg01-543I09
Chromosome1 (Build37)
Map Location 183,958,660 - 183,959,247
singlet/doubletsinglet
Overlap genenone
Upstream gene9130409I23Rik, EG625597, Fgfr3-ps, Nvl, Cnih4, Wdr26, LOC100042363, LOC666519, Cnih3, Ccdc121, A230079K17Rik, Lbr, EG433384, Enah
Downstream geneSrp9, EG625823, Degs1, 1700047M11Rik, Fbxo28, LOC435657, ENSMUSG00000073482, Trp53bp2, Capn2, LOC666624, Capn8, 4922505E12Rik, Susd4, Tlr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543I09.T7 (MSMg01no543_i09.b1)MSMg01-543I09.TJ (MSMg01no543_i09.g1)
ACCAG609039AG609040
length747750
length of high quality
(start - end)
145 (76 - 220)593 (79 - 671)
definitionCHROMAT_FILE: MSMg01no543_i09.b1 PHD_FILE: MSMg01no543_i09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:55 2005CHROMAT_FILE: MSMg01no543_i09.g1 PHD_FILE: MSMg01no543_i09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATATATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTCAGTTTCTCGTTGGTCTACCCCCTTTTTGTCTCTAATTTT
ATTAATTTGGACCATTTCTCTGTATCTTTTTTTTTCTTTTTTTCTTTTTT
TTTCGAGACAGGGTTTCTCTGTGTAGCCTTGGCTGTCCTGAAACTCACTC
TGTAGACCAGGCTGGCCTCGAACTCAGAGATCCTCCTGCCTCTGCCTCCC
AAGTGCTGGTATTAAAGGCTTGCGGTACCACACCCGGCTGTATCTTTTGT
CTAAATTAATTTGGCTAAGGGTTTATTGGTTTTGGTGATTTTTCTCCAAG
AACCAATTTCTTTATTTCATTGATTCTTTGTATTGTTTTGTGTTTGCTTT
GTTTCTGAGTTGTTGATTACAGCCATGAGTCTGATCGCTTTCTGTCACCT
ATTTCTTTTTGATGTTGTTTCTGTATTTATTCTAAAATTTTCAGCTCTAT
ATTAAAGTTACCAATATGATATCTCTCCAATTTTTTATGTAGGTGTTCGG
CGTTATGACCTTGCCTCTTAGAACAATCTTCGTTGTGTCCAATATGTTTC
TGTGTATTGTGTTTTAACTTTCATTCAATTATATAACTTTTTGGTTTTAT
TTTTCAGAATTTACTCATTTACTTACTGATTGAATGATTTTACGTTTGTG
AGGGCTTTATCTGCATGTCCATGCTGTATTTTATTTCATTTACAAAC
NNNCCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGAGGAAGGAGCACTTGGAAG
CCAGCTGCTGCTCAGCGCCACTCGGCCAAGTTCTCCGTGAGGCTGTTGCT
TGTGCGTCGTGGCTAAGGAAGGCAAGCATGAGTAGGCGCAGAGCCATGCT
CTTTTCCCTTCTGACAGACACTGATGTCATCCCTCAGAAGAGTTCAAGGA
ATCCAGTTCACTCAGACTTGGGAAGAAGGAAGGAAGGAAGCAGATATTCC
TGGAGATCTCTGAGCCACGGTTCAGACCTCGGCCTCCACGTGTACTAGGC
TGCAGTCCAGTGGAGTGACGGCATGGCATGGCACTGACGCTAGGTTACAC
GAGCTCCAAGAAACGGAGAGCCGAAGATCTCAATAGAAACAGACGCCTAG
GTGGGAAAGAAGGAAGACTCAGAGCCGATGGGAGGGGAAAGCGGTCTATG
AGGAGTCCTGGGAGTCAATGACAGGGCATATCCTGATAAATCTGGCTTCC
AAGGAGACTTGGGTTTCTTCCCTGGAGGAGCCCCAAACTCTGCTGCTCTG
GAAATATTGACTGTATTGTGATTTTGGCAGACAATAAGAAGCCTATATGA
ATCACTCATTTAAAAAAGAAGTTTCAGTGGAAAAGGCCAGCTTTAACTAA
GGAGATTCTTTCTCTTGTGCTGAGACCTCATGAGCCGCGGGAATGACTAG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_i09.g1 MSMg01no543_i09.g1 CHROMAT_FILE:
MSMg01no543_i09.g1 PHD_FILE: MSMg01no543_i09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:55 2005
         (593 letters)



>mm_chr1_183958460_183959447
          Length = 988

 Score = 1096 bits (567), Expect = 0.0
 Identities = 585/593 (98%), Gaps = 5/593 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggaggaaggagcacttggaagccagctgctgctcagcgccactcggccaagttctccgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 tggaggaaggagcacttggaagccagctgctgctcagcgccactcggccaagttctctgt 260

                                                                       
Query: 61  gaggctgttgcttgtgcgtcgtggctaaggaaggcaagcatgagtaggcgcagagccatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggctgttgcttgtgcgtcgtggctaaggaaggcaagcatgagtaggcgcagagccatg 320

                                                                       
Query: 121 ctcttttcccttctgacagacactgatgtcatccctcagaagagttcaaggaatccagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcttttcccttctgacagacactgatgtcatccctcagaagagttcaaggaatccagtt 380

                                                                       
Query: 181 cactcagacttgggaagaaggaaggaaggaagcagatattcctggagatctctgagccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactcagacttgggaagaaggaaggaaggaagcagatattcctggagatctctgagccac 440

                                                                       
Query: 241 ggttcagacctcggcctccacgtgtactaggctgcagtccagtggagtgacggcatggca 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||   | 
Sbjct: 441 ggttcagacctcggcctccacgtgtactaggctgcagtccagtggagtgacggca---c- 496

                                                                       
Query: 301 tggcactgacgctaggttacacgagctccaagaaacggagagccgaagatctcaatagaa 360
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 -ggcactgacgctaggttacacgagctccaagaaacggagagccgaagatctcaatagaa 555

                                                                       
Query: 361 acagacgcctaggtgggaaagaaggaagactcagagccgatgggaggggaaagcggtcta 420
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 556 acagacgcctaggtgggaaagaaggaagactcagagctgatgggaggggaaagcggtcta 615

                                                                       
Query: 421 tgaggagtcctgggagtcaatgacagggcatatcctgataaatctggcttccaaggagac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tgaggagtcctgggagtcaatgacagggcatatcctgataaatctggcttccaaggagac 675

                                                                       
Query: 481 ttgggtttcttccctggaggagccccaaactctgctgctctggaaatattgactgtattg 540
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 676 ttgggtttcttccctggaggagccccaaactctgctgctctggaaatgttgactgtattg 735

                                                                
Query: 541 tgattttggcagacaataagaagcctatatgaatcactcatttaaaaaagaag 593
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tgattttggcagacaataagaagcctatatgaatcactcatttaaaaaagaag 788


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 988
Length adjustment: 10
Effective length of query: 583
Effective length of database: 978
Effective search space:   570174
Effective search space used:   570174
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)