BAC Information

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BAC

Clone NameMSMg01-543I18
Chromosome1 (Build37)
Map Location 169,234,239 - 169,375,601
singlet/doubletdoublet
Overlap geneTmco1, Aldh9a1, Mgst3
Upstream geneLOC100039795, Tada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895, LOC622102, C030014K22Rik, Uck2, LOC100039844
Downstream geneLrrc52, Rxrg, Lmx1a, LOC100039879, Pbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543I18.T7 (MSMg01no543_i18.b1)MSMg01-543I18.TJ (MSMg01no543_i18.g1)
ACCAG609056AG609057
length773774
length of high quality
(start - end)		627 (46 - 672)624 (75 - 698)
definitionCHROMAT_FILE: MSMg01no543_i18.b1 PHD_FILE: MSMg01no543_i18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:57 2005CHROMAT_FILE: MSMg01no543_i18.g1 PHD_FILE: MSMg01no543_i18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(169,374,979 - 169,375,601)(169,234,239 - 169,234,862)
sequence
CCCTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAAAGAGTTAACAATTTTCAGCAAAGTGAAAAGCCCTGTGTGGC
CATGTTATCTTCACATGCCATATTACAGTTATCTCAACGAGCAGGTGATA
ATGGTACAACCTACCAGTGAGAACCGAGACCTAGGCATATTTAACTGCTG
TCTGCGAGAGGCCACATTCTCTCTCTTCCATGAAGCCATCTCCCTAGCGT
ATACTTAACAACATAACCAAAGCTCACCGTCTAATACAGTTAGATATAAC
TACTATGTCACAATGCCTTGGCCCAACAGAAATGTGAGATGCACAGCCAC
ATCCCTGTTAACAGAGTCCTTAACTGCCTGGTGTTGTAACCAGTCCTGTG
CACATTTTGCCCACCAGGTCACCTATTCGATGTAACCCTTGTGTTTCTGA
GGTACTCAGTCAGACAGTAGCAAACTCCAGTTTGCACAGGTGTGGTAAGA
AGAGGAGCAATTGTTAACTGCCTGACACCAAAATGATGCTCTGTGGGCTG
CGAGCCATCATCCTCACTGAAGTGCTCAGCAGAGCAGCAAAGTATACACA
ACTGTGGTCCCACTGTCAGGGCTGCACACACAATGGGAAGGGGAAGAGAA
GAGAAGGGCGGCTCAATGGAGGCCCGAGGACACATGCCAGGTTTTCCTTT
GCTTGTTGCCCAGATCAAATCACACTCCTGGTGGAGTTTCAGATGGTAAT
CCCTATCAATGAAGGTGGTGTCA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACACTTCTTTAACGCTCAGGCTTATG
AACTCAGGTTTTATATAGTAAAAATGGGGAGAAGGGGTTCTTTCCCTAAG
AGCTCAATACCTCTTCTGTTTTTTGCTGTGAATATATTTAAATGCTTACG
GGCAAAAAAATCTGCTGGGCAGTGGTAGCACATGCCTTTAATCCCAGAAT
TTGGAAGGCAGAGGCAGGTGGATTCCTGAGTTCCAGGACAGCCTGGTCTA
CAGAGTGAGTTCCAGGACAGCCAGGGCTGTGCAGAGAAACCCTGTCTCAA
AAAAACAAACAAAAATCCCAAACAAAACAACAACAACAAAAAACAAAACA
AAACCCAAAACAAGCAAACAAAAACCTGGTGGATGACCTCAACTATTTCT
TCTTCCCCCAGTTCTCCCTATCTTGTCGCTCTGCATGTGTAAGGATCACA
GTGCCTGCATGGGCAGAGTGGCTGGCCGAGGGAGAAAACTATCCCACACA
TGAACACAGTCCTGGTGTGAATTAGACTCGATGATGACGGAGATGTGTGG
CAACTGAGGAGATAAGGGAAATAGGGAAATCCATAAAACTTGGTATGTGA
CAAGCCAGGCAAAGGACATTTCCGAGAACTGTGCCTTCATTCCAGGTTTG
CAAACCACTCAGATATGACGCTACATATTGACTATTATATTCAGGCTCAG
TTTGGTTATCTAAATGAAGTGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_i18.b1 MSMg01no543_i18.b1 CHROMAT_FILE:
MSMg01no543_i18.b1 PHD_FILE: MSMg01no543_i18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:57 2005
         (627 letters)



>mm_chr1_169374775_169375801
          Length = 1027

 Score = 1166 bits (603), Expect = 0.0
 Identities = 618/623 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcaaagagttaacaattttcagcaaagtgaaaagccctgtgtggccatgttatc 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 gaattctcaaagagtaaacaattttcagcaaagtgaaaagccctgtgtggccatgttatc 768

                                                                       
Query: 65  ttcacatgccatattacagttatctcaacgagcaggtgataatggtacaacctaccagtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 ttcacatgccatattacagttatctcaacgagcaggtgataatggtacaacctaccagtg 708

                                                                       
Query: 125 agaaccgagacctaggcatatttaactgctgtctgcgagaggccacattctctctcttcc 184
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 707 agaaccgagacctaggcatatttaactgctgtctgcaagaggccacattctctctcttcc 648

                                                                       
Query: 185 atgaagccatctccctagcgtatacttaacaacataaccaaagctcaccgtctaatacag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 atgaagccatctccctagcgtatacttaacaacataaccaaagctcaccgtctaatacag 588

                                                                       
Query: 245 ttagatataactactatgtcacaatgccttggcccaacagaaatgtgagatgcacagcca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ttagatataactactatgtcacaatgccttggcccaacagaaatgtgagatgcacagcca 528

                                                                       
Query: 305 catccctgttaacagagtccttaactgcctggtgttgtaaccagtcctgtgcacattttg 364
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tgtccctgttaacagagtccttaactgcctggtgttgtaaccagtcctgtgcacattttg 468

                                                                       
Query: 365 cccaccaggtcacctattcgatgtaacccttgtgtttctgaggtactcagtcagacagta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 cccaccaggtcacctattcgatgtaacccttgtgtttctgaggtactcagtcagacagta 408

                                                                       
Query: 425 gcaaactccagtttgcacaggtgtggtaagaagaggagcaattgttaactgcctgacacc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gcaaactccagtttgcacaggtgtggtaagaagaggagcaattgttaactgcctgacacc 348

                                                                       
Query: 485 aaaatgatgctctgtgggctgcgagccatcatcctcactgaagtgctcagcagagcagca 544
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 347 aaaatgatgctctgtgggctgcgagccatcatcctgactgaagtgctcagcagagcagca 288

                                                                       
Query: 545 aagtatacacaactgtggtcccactgtcagggctgcacacacaatgggaaggggaagaga 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 aagtatacacaactgtggtcccactgtcagggctgcacacacaatgggaaggggaagaga 228

                                  
Query: 605 agagaagggcggctcaatggagg 627
           |||||||||||||||||||||||
Sbjct: 227 agagaagggcggctcaatggagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no543_i18.g1 MSMg01no543_i18.g1 CHROMAT_FILE:
MSMg01no543_i18.g1 PHD_FILE: MSMg01no543_i18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:57 2005
         (624 letters)



>mm_chr1_169234039_169235062
          Length = 1024

 Score = 1176 bits (608), Expect = 0.0
 Identities = 620/624 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acacttctttaacgctcaggcttatgaactcaggttttatatagtaaaaatggggagaag 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acacttctttaatgctcaggcttatgaactcaggttttatatagtaaaaatggggagaag 260

                                                                       
Query: 61  gggttctttccctaagagctcaatacctcttctgttttttgctgtgaatatatttaaatg 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggtctttccctaagagctcaatacctcttctgttttttgctgtgaatatatttaaatg 320

                                                                       
Query: 121 cttacgggcaaaaaaatctgctgggcagtggtagcacatgcctttaatcccagaatttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttacgggcaaaaaaatctgctgggcagtggtagcacatgcctttaatcccagaatttgg 380

                                                                       
Query: 181 aaggcagaggcaggtggattcctgagttccaggacagcctggtctacagagtgagttcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggcagaggcaggtggattcctgagttccaggacagcctggtctacagagtgagttcca 440

                                                                       
Query: 241 ggacagccagggctgtgcagagaaaccctgtctcaaaaaaacaaacaaaaatcccaaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 ggacagccagggctgtgcagagaaaccctgtctcaaaaaaacaaacaaaaaccccaaaca 500

                                                                       
Query: 301 aaacaacaacaacaaaaaacaaaacaaaacccaaaacaagcaaacaaaaacctggtggat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaacaacaacaacaaaaaacaaaacaaaacccaaaacaagcaaacaaaaacctggtggat 560

                                                                       
Query: 361 gacctcaactatttcttcttcccccagttctccctatcttgtcgctctgcatgtgtaagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gacctcaactatttcttcttcccccagttctccctatcttgtcgctctgcatgtgtaagg 620

                                                                       
Query: 421 atcacagtgcctgcatgggcagagtggctggccgagggagaaaactatcccacacatgaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atcacagtgcctgcatgggcagagtggctggccgagggagaaaactatcccacacatgaa 680

                                                                       
Query: 481 cacagtcctggtgtgaattagactcgatgatgacggagatgtgtggcaactgaggagata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacagtcctggtgtgaattagactcgatgatgacggagatgtgtggcaactgaggagata 740

                                                                       
Query: 541 agggaaatagggaaatccataaaacttggtatgtgacaagccaggcaaaggacatttccg 600
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 741 agggaaatagggaaatccataaaacttggtatgtgacaagccagacaaaggacatttccg 800

                                   
Query: 601 agaactgtgccttcattccaggtt 624
           ||||||||||||||||||||||||
Sbjct: 801 agaactgtgccttcattccaggtt 824


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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