TCCATATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCTCACCTTTCAATAATGTTTCTAGGGCTACTAAAAAACT
CACATTTACAAAATAGTTGATAAAAACATTCCTCTGGATTGTACAAGAAG
GGAGGCGGGACACTGACAGACATGATGGATGCTTAGTTGGACTTGACTTC
TTTCTCTTCTACAGAGGCTGGACTCTGGTTTTCCGTCTCTCCATTTTCTG
CAGGCAGATCTGTGGTTTGCTGGTCAGCCACTTCATCCTGTTTGCCCTTT
GTTCCCCTCTTCCCTTCTATCTGCATCTTTTTTGGCTGATGTTTTATCCT
TTCCAGCGGTCTTTTTCAGAGTGATAGAGGAAGTGCTGGAGCAGCCTCTG
GCATGGGCTCACATTTGGATGCATGTGCACCTGCATGTATATGCACACAC
ATACCATATATACACAGGCCATTACATTTTCCTATATTCTATTTTATCAC
ATAACAATTTATTTATATAATATGCAAATATCCCCGTACATGGTAGAAGG
GACTTTGGAGGTTGAGTCCAAGTTTGGATCTTGAACACAGAGATGATCCT
GGATTCAGTAAAAAGCCAAAACCTTTTATCTGCTAATACAAATTTGATAT
CGCAGGATGCCATTCCCACAGTGGTCTCTGTCTTCTGGGAACCATACACT
GGGGTTCCTGTGTCAGCAAGGCACTGGCTTTGCTGCTCGGAGACT

NNNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGAGGTCCGGATAATA
TTTCCCACTGATGGGAGTTGGGTCTCTCATGTCAGCCAGATCAGTCAGGG
GGCTCAGCACCTCCATCTAATCAGAGCTGGGCTGGGTTCAGCCTAGGGTG
GATTCATTCCTCTCACTTCTGTTTCCTCTCGATTTCTAAGACTAATCTCT
TCCTTGATTGACAGGCTGGCGGCTTTTTATCTTCTCCATCTTAAAACATT
GGTAGGGGTTTTGGTCTCAGACTTCACAGGTTTGGAGTTCTGCCCCTTCC
AAGTTTGGAAAATGTTTTGGGGGAGAACAGACAGAGCTCCTAAAGATTGT
GAGACAACTGGAGCGTTTGCTGCATGTTATCAAAGCTCAACAGCCTTTCG
CACAGCCCAGGGTCTGGAAGCCACCGGCAGTGGAAAGCCCACTGTGAGTG
GCTTCTGAGGTTTCCAGATGTTCATGCTAACCAGAACAGTTTCTAAAAGC
TCTGTTTCTTTCTTTCCCTTTTAATACCCTTCCCCTGTGTTATCTAGATC
AGATCCTCAACCAAATTTAAAACCAGTGAGTGAAATGGGGGAGGGTAGGT
ATATCAGCCAGCAACTGATCACTCTCTTCAGAGCACTCATCTTCTTGGGA
ATTTTATTCTGTTTTGTCCTCTTCATCTCAACACCACTCTATTATCTTTA
TAN

Query= MSMg01no543_j04.g1 MSMg01no543_j04.g1 CHROMAT_FILE:
MSMg01no543_j04.g1 PHD_FILE: MSMg01no543_j04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:59 2005
         (667 letters)



>mm_chr1_122883511_122884577
          Length = 1067

 Score = 1212 bits (627), Expect = 0.0
 Identities = 657/667 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagaggtccggataatatttcccactgatgggagttgggtctctcatgtcagccagatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 tagaggtccggataatatttcccactgatgggagttgggtctctcatgtcagccagatca 808

                                                                       
Query: 61  gtcagggggctcagcacctccatctaatcagagctgggctgggttcagcctagggtggat 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 807 gtcagggggctcagcacctccatctaatcggagctgggctgggttcagcctagggtggat 748

                                                                       
Query: 121 tcattcctctcacttctgtttcctctcgatttctaagactaatctcttccttgattgaca 180
           ||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||
Sbjct: 747 tcattcctctcacttctgtttcctctccagttctaagactaatctcttcctagattgaca 688

                                                                       
Query: 181 ggctggcggctttttatcttctccatcttaaaacattggtaggggttttggtctcagact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ggctggcggctttttatcttctccatcttaaaacattggtaggggttttggtctcagact 628

                                                                       
Query: 241 tcacaggtttggagttctgccccttccaagtttggaaaatgttttgggggagaacagaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 627 tcacaggtttggagttctgccccttccaagtttggaaaatgttttggggaagaacagaca 568

                                                                       
Query: 301 gagctcctaaagattgtgagacaactggagcgtttgctgcatgttatcaaagctcaacag 360
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 567 gagctcctaaagattgcgagacaactggagcgtttgctgcatgttatcaaagctcagcag 508

                                                                       
Query: 361 cctttcgcacagcccagggtctggaagccaccggcagtggaaagcccactgtgagtggct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 cctttcgcacagcccagggtctggaagccaccggcagtggaaagcccactgtgagtggct 448

                                                                       
Query: 421 tctgaggtttccagatgttcatgctaaccagaacagtttctaaaagctctgtttctttct 480
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 447 tctgaggtttccagatgttcatgctaaccagcacagtttctaaaagctctgtttctttct 388

                                                                       
Query: 481 ttcccttttaatacccttcccctgtgttatctagatcagatcctcaaccaaatttaaaac 540
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttcccttttaatactctacccctgtgttatctagatcagatcctcaaccaaatttaaaac 328

                                                                       
Query: 541 cagtgagtgaaatgggggagggtaggtatatcagccagcaactgatcactctcttcagag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cagtgagtgaaatgggggagggtaggtatatcagccagcaactgatcactctcttcagag 268

                                                                       
Query: 601 cactcatcttcttgggaattttattctgttttgtcctcttcatctcaacaccactctatt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cactcatcttcttgggaattttattctgttttgtcctcttcatctcaacaccactctatt 208

                  
Query: 661 atcttta 667
           |||||||
Sbjct: 207 atcttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)