Query= MSMg01no543_k23.b1 MSMg01no543_k23.b1 CHROMAT_FILE:
MSMg01no543_k23.b1 PHD_FILE: MSMg01no543_k23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:08 2005
(692 letters)
>mm_chr1_30741769_30742860
Length = 1092
Score = 1096 bits (567), Expect = 0.0
Identities = 582/587 (99%), Gaps = 1/587 (0%)
Strand = Plus / Minus
Query: 4 ggaattcagctgctgtttcttgaattcctcaccctctctgaggctacacaaggtttagac 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ggaattcagctgctgtttcttgaattcctcaccctctctgaggctacacaaggtttagac 528
Query: 64 agcttggatgtctcagataaaggcagagggatttttgcaacacagcttggtggtcttagc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 agcttggatgtctcagataaaggcagagggatttttgcaacacagcttggtggtcttagc 468
Query: 124 atccttctgtgaagttaccgaggagggaaatccttactctaggaaacaacagggccaagg 183
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 atccttctgtgaagttaccaaggagggaaatccttactctaggaaacaacagggccaagg 408
Query: 184 gagtaaacctatgaaggccaacttgtcccatattggcactgcaaagacacttacctgaac 243
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 407 gagtaaacctatgaaggccaacttgtcccatgttggcactgcaaagacacttacctggac 348
Query: 244 tgaccacaggttggacaggtgatgagatgctgaaccagttcaggcagtgcagccagggat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tgaccacaggttggacaggtgatgagatgctgaaccagttcaggcagtgcagccagggat 288
Query: 304 aaaataccaaaagcagaaactctttgtgcttgtacagctgaggtccatggggaataccaa 363
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 287 aaaataccaaaagcagaaactctttgtgcttgtacagctgaggtccacggggaataccaa 228
Query: 364 acaaggtcttcctccctccccctcccagatggattcactgaagaattcaatagactttta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 acaaggtcttcctccctccccctcccagatggattcactgaagaattcaatagactttta 168
Query: 424 aggaagaagtaaacagtattccttgtcaaatatttacataaaatagaaaaagggaggcat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 aggaagaagtaaacagtattccttgtcaaatatttacataaaatagaaaaagggaggcat 108
Query: 484 gcacccaaactctttttgtgaaaccagtattattctgatatcaacatataaagacacaat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 gcacccaaactctttttgtgaaaccagtattattctgatatcaacatataaagacacaat 48
Query: 544 -aaaaattataggcaaaatttcatagatataaaatttctcaataaaa 589
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47 aaaaaattataggcaaaatttcatagatataaaatttctcaataaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space: 737924
Effective search space used: 737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_k23.g1 MSMg01no543_k23.g1 CHROMAT_FILE:
MSMg01no543_k23.g1 PHD_FILE: MSMg01no543_k23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:08 2005
(665 letters)
>mm_chr1_30588795_30589859
Length = 1065
Score = 1189 bits (615), Expect = 0.0
Identities = 655/673 (97%), Gaps = 8/673 (1%)
Strand = Plus / Plus
Query: 1 aagagagggtaaattgtcagtgaaaaaaaaatgcggatgcaaaatccgctaagttagaga 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 aagagagggtgaattgtcagtgaaaaaaaaatgcggatgcaaaatccgctaagttagaga 252
Query: 61 caatactgattagcgatttttgtagaaaggaagagaaatgcagtgggaaatggctctcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 caatactgattagcgatttttgtagaaaggaagagaaatgcagtgggaaatggctctcac 312
Query: 121 agctgtacagccccaaagaagcatcaatttgaagaacatccatggacaaaaacacctaca 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 313 agctgtacagccccaaagaagcatcaatttgaagaacatccattgacaaaaacacctaca 372
Query: 181 tttgaacgaaggaagtagggaaggcatcaagaaacacactgaataggatagagagggcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tttgaacgaaggaagtagggaaggcatcaagaaacacactgaataggatagagagggcaa 432
Query: 241 tttcaaatgacgtgcacccccacccacccccagacagcatagcaaaaaaataatgtctac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tttcaaatgacgtgcacccccacccacccccagacagcatagcaaaaaaataatgtctac 492
Query: 301 ctagagaagaagaaggaaacaagagtagaccttttcccaggagcctaattttgaaactat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ctagagaagaagaaggaaacaagagtagaccttttcccaggagcctaattttgaaactat 552
Query: 361 ctcagtcagactgcaaaggccagactcacacaacgccagaattcaggtcattactcactg 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 553 ctcagtcagactgcaaaggccagactcacacaatgccagaattcaggtcattactcactg 612
Query: 421 aatctctggacttatactggtgcccagtgatatctcacagctacagagagaca------- 473
|||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 613 aatctctggacttatactggtgaccagtgatatctcacagctacagagagacaagcacac 672
Query: 474 -tcctggccttttttgtgactacattggcctccatatcacaactacaggaagactttagt 532
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 atcctggccttttttgtgactacattggcctccatatcacaactacaggaagactttagt 732
Query: 533 gccatatagattacagtccatcatgagaccagccatagagactaagggactatagactaa 592
||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||
Sbjct: 733 gccatatagattacagtccattatgagaccagccatggagactaagggattatagactaa 792
Query: 593 cacattctcagccacaaacatcccaagcttcaacatccactactactgcatcaaccacac 652
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 793 cacattctcagccacaaacatcctgagcttcaacatccactactactgcatcaaccacac 852
Query: 653 ttaccatagcctt 665
| |||||||||||
Sbjct: 853 taaccatagcctt 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
