Query= MSMg01no543_l04.b1 MSMg01no543_l04.b1 CHROMAT_FILE:
MSMg01no543_l04.b1 PHD_FILE: MSMg01no543_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:09 2005
(343 letters)
>mm_chr1_62479328_62480074
Length = 747
Score = 636 bits (329), Expect = 0.0
Identities = 341/347 (98%), Gaps = 4/347 (1%)
Strand = Plus / Minus
Query: 1 cactccctttaaatgccgagtagggctggtgagactcctcagctggtaaaggttcttgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 cactccctttaaatgccgagtagggctggtgagactcctcagctggtaaaggttcttgcc 667
Query: 61 ttgaagcttgatgacctgagttcaagccctgggacgcccatgacagaagagttctcactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ttgaagcttgatgacctgagttcaagccctgggacgcccatgacagaagagttctcactt 607
Query: 121 ccataatttgtcctctgacttacacatatgtgggtgtcacacatttacccacatatacaa 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ccataatttgtcttctgacttacacatatgtgggtgtcacacatttacccacatatacaa 547
Query: 181 gcatacgcacatgcatgtacaagtggataaatgtaataggaatacttaaaaataaa---- 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gcatacgcacatgcatgtacaagtggataaatgtaataggaatacttaaaaataaataaa 487
Query: 237 caaaggtcaaataatattcacatatcatatttgattccgctgctcaaccatcaatgccat 296
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 486 caaaggtcaaataatattcacatatcatatttgattctgctgctcaaccatcaatgccat 427
Query: 297 aagggctcgaccccactttgtttgttgtgcctgatgctgttgttcgc 343
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aagggctcgaccccactttgtttgttgtgcctgatgctgttgttcgc 380
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 747
Length adjustment: 9
Effective length of query: 334
Effective length of database: 738
Effective search space: 246492
Effective search space used: 246492
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_l04.g1 MSMg01no543_l04.g1 CHROMAT_FILE:
MSMg01no543_l04.g1 PHD_FILE: MSMg01no543_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:09 2005
(139 letters)
>mm_chr1_62312712_62313250
Length = 539
Score = 269 bits (139), Expect = 5e-77
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 1 aacctattaaacacacatggaaaatatatctgtgaagatattgaaaaataagacatatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacctattaaacacacatggaaaatatatctgtgaagatattgaaaaataagacatatgt 260
Query: 61 aactttcataaattcagtttctcttctgccatgccactggctagatctaacttcatattc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactttcataaattcagtttctcttctgccatgccactggctagatctaacttcatattc 320
Query: 121 agcattacaggaaacaaga 139
|||||||||||||||||||
Sbjct: 321 agcattacaggaaacaaga 339
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 139
Length of database: 539
Length adjustment: 8
Effective length of query: 131
Effective length of database: 531
Effective search space: 69561
Effective search space used: 69561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
