Query= MSMg01no543_l13.b1 MSMg01no543_l13.b1 CHROMAT_FILE:
MSMg01no543_l13.b1 PHD_FILE: MSMg01no543_l13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:10 2005
(568 letters)
>mm_chr1_150584499_150585465
Length = 967
Score = 654 bits (338), Expect = 0.0
Identities = 368/378 (97%), Gaps = 1/378 (0%)
Strand = Plus / Plus
Query: 8 ttctcctaaaccaaggcatcaagccttcacaggaccaagggcgtctcctcccattaatgt 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttctcctaaaccaaggcatcaagccttcacaggaccaagggcgtctcctcccattaatgt 267
Query: 68 cagacaaggccatcctctgctacatatgcagctggagtcatgaatccttccatgtgtact 127
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 268 cagacaaggccatcctctgctacatatgcagctggagtcatggatccttccatgtgtact 327
Query: 128 tttaggttagtggtttagtgcctagaagctcttgggagtctggttggttgatattgctgt 187
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 328 ttcaggttggtggtttagtgcctagaagctcttgggagtctggttggttgatattgttgt 387
Query: 188 tcttcctatggtgttataaccccttcaaattgaaacccattcagttgaagggagcagata 247
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 388 tcttcctatggtgttataaccccttcaaattgaaacccattcagttgaatggagcagata 447
Query: 248 tacacacacctagaaaatgtattcaattttagtcctccaaaaagagtaaggagagattgc 307
| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 448 tccacacacctagaaaatgtattcaatttaa-tcctccaaaaagagtaaggagagattgc 506
Query: 308 atatttaggttaagtaaaattacaaattaattagagtctaggaatgtagatcatggtcaa 367
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 507 atatttaggttaagtaaaattacaaattaattaaagtctaggaatttagatcatggtcaa 566
Query: 368 gagttttgatttaatctt 385
||||||||||||||||||
Sbjct: 567 gagttttgatttaatctt 584
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 967
Length adjustment: 10
Effective length of query: 558
Effective length of database: 957
Effective search space: 534006
Effective search space used: 534006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_l13.g1 MSMg01no543_l13.g1 CHROMAT_FILE:
MSMg01no543_l13.g1 PHD_FILE: MSMg01no543_l13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:10 2005
(652 letters)
>mm_chr1_150752254_150753306
Length = 1053
Score = 1193 bits (617), Expect = 0.0
Identities = 644/653 (98%), Gaps = 1/653 (0%)
Strand = Plus / Minus
Query: 1 tgatggctgccttgattctctgtgtgaaattattcttgcatggcatttgtaattgtttct 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 tgatggctgcctggattctctgtgtgaaattattcttgcatggcatttgtaattgtttct 794
Query: 61 gtcaggaaaatggaaaccttgcagatatttactaatgtgccttggagagcatggaacctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 gtcaggaaaatggaaaccttgcagatatttactaatgtgccttggagagcatggaacctt 734
Query: 121 ggagatttgtgtaatatacctttggaaatggaaattctacagatagttcataagctaact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ggagatttgtgtaatatacctttggaaatggaaattctacagatagttcataagctaact 674
Query: 181 cgtcagctcatgatagtgaaaatcatcctgaggcagtatttgtccttgggaaaacctgca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cgtcagctcatgatagtgaaaatcatcctgaggcagtatttgtccttgggaaaacctgca 614
Query: 241 ttgttactcttcagctaatataccacagaagaaactggatagttgaagaaaacctgacat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ttgttactcttcagctaatataccacagaagaaactggatagttgaagaaaacctgacat 554
Query: 301 gtatattagaagactgcacatggatcataaaactatgactttttatgcttgtaactgtcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gtatattagaagactgcacatggatcataaaactatgactttttatgcttgtaactgtcc 494
Query: 361 tttgtagcactgtagctacagtcacaatgcaggaacatgagaaatgactcattatatctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tttgtagcactgtagctacagtcacaatgcaggaacatgagaaatgactcattatatctt 434
Query: 421 tctctatgagcagcattgcaattataacataagacaatgaagctatgttatttgaaggaa 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tctctatgagcagcgttgcaattataacataagacaatgaagctatgttatttgaaggaa 374
Query: 481 ttggctttagcagtgtaagacaaccctatagaggcactttctaagctgccttttttatat 540
|||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 373 ttggctctagcagtgtaagacaaccccatagagacactttctaagctgccttttttatat 314
Query: 541 gaaatgtgcctgtggttctgtacataacagattttacttttagtataattcattccaaat 600
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 313 gaaatgtgtctgtggttctgtacataacagattttacttttagtataattcatttcaaat 254
Query: 601 gaaactattaaaaaaaaaaa-gagcaagtaatgtttccaacacttgagctgta 652
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 253 gaaactattaaaaaaaaaaaagagcaagtagtgtttccaacacttgagctgta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1053
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1043
Effective search space: 669606
Effective search space used: 669606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
