NNNACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCCGTAGAAGAAAAGCTCTGATAGCACAAGATGGCTTGAGT
TCAATTCCAGGAACCAGATTAGAAGAGAACTGAAGCTGTCCTCTCTGCTC
CACATGTGTCCCCACACCACCACCCACATGAAGAAAACATACTTGCACAC
CAACACCACCATCACTACAAACAACAATAACAGTGTTCAACAAATGTAGG
TCTTGTGAAAATCTACATGGCAATCCTTTGGCATTCTAGGACTGGTCACA
CATCAGCTCTCATGTCAGTTATGTAAAACAGCACAGTATTTACATGCAAC
TGACACTTGTCCTATATTTTAAATGATTTTTAGATAATTTATAATGTATT
ACACAATGTAAAAACTGTAAAACAGTAGGGCACAGACACACTTCTATAGT
GTTTGTAGAATAGTTTGTTCTGGGATAAACATGACCCAAATGAACTTAAG
AAGAAAAGGATTTATTTTATCTTATAACTTTTGATCACAGTCCATCACTG
AGGGAAGCCTAGACTTGAATTCAGGCTGGCAGCAACATGGAAGGGTGAAC
TGAAGCAGAGACCATAAAGTGAAGTTGCTTACTGGTTTGCTCAATGGCTT
CTCTAGTGCTTTCGTATACAACCCAGGACTACTTGCCCATGGATGGTAGG
TAGTACCCAGAGTTAGTGGGACCTTCCCAGATTAGTTATTATTCATAATA
CA

NNNGGCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAACTTTTA
TCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAAAGAG
ATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATT
GATGGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTA
CTTGGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCAGTTAGCG
AGAATTTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCT
GAAGTTCTCTATCTTTGTTGGGAATTTCTGTGGTTTAGGTATCAGAGTAA
TAGTGGCTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTG
TGAAATAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATA
GAACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGAC
TATTAATAACTGCTTCTATTTCTTTAGGTGATATGGGACTATTTAGATGA
TCAACTTGATCCTGATTCAATGTTGGTACCTGGTATCTGTCCAGAAATTT
GTCCATTTCGTCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTAGA
AAGATCTGATGGTGTTTTGGATTCTTCAGGATCTGTTGTTATGTCTCCC

Query= MSMg01no544_b11.b1 MSMg01no544_b11.b1 CHROMAT_FILE:
MSMg01no544_b11.b1 PHD_FILE: MSMg01no544_b11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:38 2005
         (662 letters)



>mm_chr1_125993423_125994484
          Length = 1062

 Score = 1243 bits (643), Expect = 0.0
 Identities = 655/659 (99%), Gaps = 1/659 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctccgtagaagaaaagctctgatagcacaagatggcttgagttcaattccagga 63
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctccgtagaagaaaatctctgatagcacaagatggcttgagttcaattccagga 263

                                                                       
Query: 64  accagattagaagagaactgaagctgtcctctctgctccacatgtgtccccacaccacca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 accagattagaagagaactgaagctgtcctctctgctccacatgtgtccccacaccacca 323

                                                                       
Query: 124 cccacatgaagaaaacatacttgcacaccaacaccaccatcactacaaacaacaataaca 183
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 324 cccacatgaagaaaacatacttgcacaccaacaccaccatcaccacaaacaacaataaca 383

                                                                       
Query: 184 gtgttcaacaaatgtaggtcttgtgaaaatctacatggcaatcctttggcattctaggac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtgttcaacaaatgtaggtcttgtgaaaatctacatggcaatcctttggcattctaggac 443

                                                                       
Query: 244 tggtcacacatcagctctcatgtcagttatgtaaaacagcacagtatttacatgcaactg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tggtcacacatcagctctcatgtcagttatgtaaaacagcacagtatttacatgcaactg 503

                                                                       
Query: 304 acacttgtcctatattttaaatgatttttagataatttataatgtattacacaatgtaaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acacttgtcctatattttaaatgatttttagataatttataatgtattacacaatgtaaa 563

                                                                       
Query: 364 aactgtaaaacagtagggcacagacacacttctatagtgtttgtagaatagtttgttctg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aactgtaaaacagtagggcacagacacacttctatagtgtttgtagaatagtttgttctg 623

                                                                       
Query: 424 ggataaacatgacccaaatgaacttaagaagaaaaggatttattttatcttataactttt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggataaacatgacccaaatgaacttaagaagaaaaggatttattttatcttataactttt 683

                                                                       
Query: 484 gatcacagtccatcactgagggaagcctagacttgaattcaggctggcagcaacatggaa 543
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 684 gatcacagtccatcactgagggaagccaagacttgaattcaggctggcagcaacatggaa 743

                                                                       
Query: 544 gggtgaactgaagcagagaccataaagtgaagttgcttactggtttgctcaatggcttct 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gggtgaactgaagcagagaccataaagtgaagttgcttactggtttgctcaatggcttct 803

                                                                      
Query: 604 ctagtgctttcgtatacaacccaggactacttgcccatggatggtaggtagtacccaga 662
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 804 ctagtgctttcgtatacaacccaggactacttgcccatg-atggtaggtagtacccaga 861


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)