BAC Information

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BAC

Clone NameMSMg01-544B13
Chromosome1 (Build37)
Map Location 176,728,588 - 176,729,249
singlet/doubletsinglet
Overlap geneFmn2
Upstream geneEG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220
Downstream geneGrem2, Rgs7, Fh1, Kmo, Opn3, Chml, Wdr64
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544B13.T7 (MSMg01no544_b13.b1)MSMg01-544B13.TJ (MSMg01no544_b13.g1)
ACCAG609475AG609476
length753750
length of high quality
(start - end)		666 (52 - 717)648 (83 - 730)
definitionCHROMAT_FILE: MSMg01no544_b13.b1 PHD_FILE: MSMg01no544_b13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:39 2005CHROMAT_FILE: MSMg01no544_b13.g1 PHD_FILE: MSMg01no544_b13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGAAGCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCAAGGCAGATTTCTCTCCTCAGTCTGCCTCCGAGATTAC
CTCTCAAGCACGACTGGTTTCCCACAGTTGAAAGTAATATGTTTGAGAAG
TTGGAGGTAATCCTTCTGTACTTAGAAAATGGGGGCTCTGGGATCAATAA
TGTCCAATCAGAAACTACGCTGGAAAGGCTAGAGAGGGAAGAGGTTGCGT
TAGCCATGTTGTAGATATTAGTCCCTTTATGGAGCCAGTGGCAGAGCAGG
ACCAAGACATTTTTTTTTTATTATTCTTTGTTTTGTTTGAGTCTTTGGTG
GTGTGAGGCTGACAGTAATAGTGAAAGGCCTTTTGTATTGTACTTACTAG
CAAGCAGGCACCTCATGAAAGGTCACCTTGCTGATGATGAAGAACTAGCT
AAAAAATTACAGAGCAGGCTTGTTTGCTAACATTTCCCATCAAGTCAAAT
GTCTAACAATGGAACTACAGCCCTCAGGACAAATTATTGTCACACAGATA
GCTTGTGCTTTTTGCTTTATGGGGAATCTGTTGCTTATAGTTTGCTCCTC
CTTGAAAGTAAACTACAAACTTTAAATCATTATTGTCCAAGTTTTTATAT
ATATAGAATGTTTTCTGGCTTTATTCTAGTGCAGTTGACAAATTATGCTA
TCTGTATACATCCTGAAATGATTGTCATAGTCTAGCCAAATGATAAATCC
ATN

ATGGGACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTT
TTATCATGAATGGGTGTTGAATCTTGTCAAATGCTTTTTCTGCATCTAAC
GAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTAC
ATTGATGGATTTTCGTATATTAAACCATCCCTGCATTCCTGGAATAAAAC
CTATTTGGTCAAGATGGATGATTGCTTTAATATGTTCTTGGATTCGGTTA
GCAAGAATTTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGG
TCTGAGGTTTTCTATCTTTGTTGAATCTTTCTGTGGTTTAGGTATCAGAG
TAATAGTGGCTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATT
TTGTGAAATAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTG
ATAGAACTCTGCACTAAACCCGTCTGGTCCTGGGCTTTTTTTGGCTGGGA
GACTATTAATAACTGCTTCTATTTCTTTAGGTGATATGGGACTGTTTAGA
TGGTCAACTTGATCCTGACTCAACTTTGGTACCTGGTATCTGTCCAGAAA
TTTGTCCATTTCGTCCAGGTTTTCCAGTTTTGTTGAGTATAACCTTTTGT
AGAAGGATCTGATGGTGTTTTGGATTTCTTCAGGATTTGTTGTTATGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_b13.b1 MSMg01no544_b13.b1 CHROMAT_FILE:
MSMg01no544_b13.b1 PHD_FILE: MSMg01no544_b13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:39 2005
         (666 letters)



>mm_chr1_176728384_176729449
          Length = 1066

 Score = 1257 bits (650), Expect = 0.0
 Identities = 659/662 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaggcagatttctctcctcagtctgcctccgagattacctctcaagcacgact 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaggcagaagtctctcctcagtctgcctccgagattacctctcaagcacgact 264

                                                                       
Query: 65  ggtttcccacagttgaaagtaatatgtttgagaagttggaggtaatccttctgtacttag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggtttcccacagttgaaagtaatatgtttgagaagttggaggtaatccttctgtacttag 324

                                                                       
Query: 125 aaaatgggggctctgggatcaataatgtccaatcagaaactacgctggaaaggctagaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaatgggggctctgggatcaataatgtccaatcagaaactacgctggaaaggctagaga 384

                                                                       
Query: 185 gggaagaggttgcgttagccatgttgtagatattagtccctttatggagccagtggcaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggaagaggttgcgttagccatgttgtagatattagtccctttatggagccagtggcaga 444

                                                                       
Query: 245 gcaggaccaagacattttttttttattattctttgttttgtttgagtctttggtggtgtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcaggaccaagacattttttttttattattctttgttttgtttgagtctttggtggtgtg 504

                                                                       
Query: 305 aggctgacagtaatagtgaaaggccttttgtattgtacttactagcaagcaggcacctca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aggctgacagtaatagtgaaaggccttttgtattgtacttactagcaagcaggcacctca 564

                                                                       
Query: 365 tgaaaggtcaccttgctgatgatgaagaactagctaaaaaattacagagcaggcttgttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgaaaggtcaccttgctgatgatgaagaactagctaaaaaattacagagcaggcttgttt 624

                                                                       
Query: 425 gctaacatttcccatcaagtcaaatgtctaacaatggaactacagccctcaggacaaatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gctaacatttcccatcaagtcaaatgtctaacaatggaactacagccctcaggacaaatt 684

                                                                       
Query: 485 attgtcacacagatagcttgtgctttttgctttatggggaatctgttgcttatagtttgc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 attgtcacacagatagcttgtgctttttgctttatggggaatctgttgcttatagtttgc 744

                                                                       
Query: 545 tcctccttgaaagtaaactacaaactttaaatcattattgtccaagtttttatatatata 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tcctccttgaaagtaaactacaaactttaaatcattattgtccaagtttttatatatata 804

                                                                       
Query: 605 gaatgttttctggctttattctagtgcagttgacaaattatgctatctgtatacatcctg 664
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gaatgttttctggctttattcaagtgcagttgacaaattatgctatctgtatacatcctg 864

             
Query: 665 aa 666
           ||
Sbjct: 865 aa 866


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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