Query= MSMg01no544_d13.b1 MSMg01no544_d13.b1 CHROMAT_FILE:
MSMg01no544_d13.b1 PHD_FILE: MSMg01no544_d13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:48 2005
(689 letters)
>mm_chr1_20450255_20451347
Length = 1093
Score = 1272 bits (658), Expect = 0.0
Identities = 681/694 (98%), Gaps = 11/694 (1%)
Strand = Plus / Plus
Query: 4 ggaattccacatgctttcc----tccccccatagatgaattgctacaggcaatgactcct 59
|||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattccacatgc---cccccctccccccatagatgaattgctacaggcaatgactcct 259
Query: 60 gagtgagggagagtcagcttcctctgggaatcagctaccacacaggctatccaatcctag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gagtgagggagagtcagcttcctctgggaatcagctaccacacaggctatccaatcctag 319
Query: 120 gaggtcagcccaggatgtatgtacataagaacaacaataaacgaaatccataggttgtat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gaggtcagcccaggatgtatgtacataagaacaacaataaacgaaatccataggttgtat 379
Query: 180 atgcatatggatatccatatatgtattcatgtaacaataacaaagaagatattactaatt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atgcatatggatatccatatatgtattcatgtaacaataacaaagaagatattactaatt 439
Query: 240 tggaaggaaggggagacacaggatggaggggagggaagaaaaggttaagagtcctgtatg 299
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 440 tggaaggaaggggagacacaggatggaggggagggaagaaaagggtaagagtcctgtatg 499
Query: 300 tgccttgttcatcgatgtctccaaaggaaaagatttaaaatttcaataaaaagaaaggca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgccttgttcatcgatgtctccaaaggaaaagatttaaaatttcaataaaaagaaaggca 559
Query: 360 atacattgaaggggaaaaccacacaaagaaacacatctgatacctccttcttcacaggtc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atacattgaaggggaaaaccacacaaagaaacacatctgatacctccttcttcacaggtc 619
Query: 420 ttgattaaattcatttgcttatatactttataaggaagacaaaggaaatatcagttaagg 479
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttgattaaattcatttgcttatgtactttataaggaagacaaaggaaatatcagttaagg 679
Query: 480 ctactacatgacttgaaagtagcattgtgctttattaagcatcatgtgaatagttgtggg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctactacatgacttgaaagtagcattgtgctttattaagcatcatgtgaatagttgtggg 739
Query: 540 gtttggatacggcagaaagagcatggtttttcctgtcaatgctaactccaaaaattatca 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gtttggatacggcagaaagagcatggtttttcctgtcaatgctaactccaaaaattatca 799
Query: 600 cccttagttcaggaataagtaaacttag----ctgagttttctaactgggatgaagtttc 655
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 800 cccttagttcaggaataagtaaacttagacagctgagttttctaactgggatgaagtttc 859
Query: 656 aagaaccttgattttgaagagcttacctgtcccc 689
||||||||||||||||||||||||||||||||||
Sbjct: 860 aagaaccttgattttgaagagcttacctgtcccc 893
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1093
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1083
Effective search space: 735357
Effective search space used: 735357
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_d13.g1 MSMg01no544_d13.g1 CHROMAT_FILE:
MSMg01no544_d13.g1 PHD_FILE: MSMg01no544_d13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:49 2005
(655 letters)
>mm_chr1_20600792_20601846
Length = 1055
Score = 1166 bits (603), Expect = 0.0
Identities = 642/655 (98%)
Strand = Plus / Minus
Query: 1 cactatactggggcatcaagccttcacaagaccaagggcatctgctcccattgatgccag 60
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 989 cactatactggggcatcaagccttcacaagtccaagggcatctcctcccattgatgccag 930
Query: 61 ataaggccatcctctgctacatatgtgactggagccatgagtccctccatgtgtactccc 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 929 ataaggccatcctctgctacatatgtggctggagccatgagtccctccatgtgtactccc 870
Query: 121 tggttgatagtttagtcctttggtgctctgggggtctggttgattggtattgttgttctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 tggttgatagtttagtcctttggtgctctgggggtctggttgattggtattgttgttctt 810
Query: 181 cctatggggctataagcccattcagctccttcacttcttgccctaactcttcccttgggg 240
||||||||||| |||| |||||||| ||||||| |||| |||||||||||||||||||||
Sbjct: 809 cctatggggctgtaagtccattcagttccttcagttctcgccctaactcttcccttgggg 750
Query: 241 cccccaagctcagtctgataaagatctcagcatgagataaatgagcaattcacaaatggg 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 749 cccccaagctcagtctgataaagatctcagcatgagatacatgagcaattcacaaatggg 690
Query: 301 aagcatcgtcatttaacctgtcacaggggaaacaatgcatacatgttcacctttctttct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 aagcatcgtcatttaacctgtcacaggggaaacaatgcatacatgttcacctttctttct 630
Query: 361 tatatgtgtggtgctgtgcagtcaggaactaaacctgatcgaaaggaggatggctgtcta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tatatgtgtggtgctgtgcagtcaggaactaaacctgatcgaaaggaggatggctgtcta 570
Query: 421 tggggggtgtgcgtgtcagggaatctaacatgagaaaggagggaagagatctattcatac 480
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ttgggggtgtgcgtgtcagggaatctaacatgagaaaggagggaagagatctattcatac 510
Query: 481 ataaataattaattattaactcctctgtgactttaaaaacagattctatgtatttcttgc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ataaataattaattattaactcctctgtgactttaaaaacagattctatgtatttcttgc 450
Query: 541 cacctactcttttggggtgtcatttttccctttgtccaagaacttgaaggtgtgctagta 600
||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 449 cacctactcttctggggtgtcatttttccctttgtcctagaacttgcaggtgtgctagta 390
Query: 601 agttaccaacatgagatctctccaatatttaaatgtatgctcttagtgctctatg 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 agttaccaacatgagatctctccaatatttaaatgtatgctcttagtgctctatg 335
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
