Query= MSMg01no544_f10.b1 MSMg01no544_f10.b1 CHROMAT_FILE:
MSMg01no544_f10.b1 PHD_FILE: MSMg01no544_f10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:58 2005
(550 letters)
>mm_chr1_83248130_83249081
Length = 952
Score = 1017 bits (526), Expect = 0.0
Identities = 542/548 (98%), Gaps = 2/548 (0%)
Strand = Plus / Minus
Query: 5 gaattctacctaattcattattacatactttgctctgtttctgactcaaattgtggcatg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 gaattctacctaattcattattacatactttgctctgtttctgactcaaattgtggcatg 693
Query: 65 gatcgtaaaatgctaaatggcctgtgatgctctgagcacacacagcccaggggcaaagcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 gatcgtaaaatgctaaatggcctgtgatgctctgagcacacacagcccaggggcaaagcc 633
Query: 125 tgtttgaggttggctgatgttgtccttgagctgaacacctggtaaattatgttcatatat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tgtttgaggttggctgatgttgtccttgagctgaacacctggtaaattatgttcatatat 573
Query: 185 ggcatagctctctcttgccatgtgacaaacagcagtgcgtggccctcaaaaaccggcagt 244
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 572 ggcatagctctctcttgccatgtgacaaacagcagtgtgtggccctcaaaaactggcagt 513
Query: 245 gagactcccttcctacagaagaaaacaaaatgaatcaccatttgttgatagagagggagg 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 512 gagactcccttcctacagaagaaaacaaaatgaatcaccatttgttgatagagagggaag 453
Query: 305 gtaagcaaaaccagactgttccttagtttctactattctgagccctgggcccatgtgtga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gtaagcaaaaccagactgttccttagtttctactattctgagccctgggcccatgtgtga 393
Query: 365 catttatgaagggtaagcttgacatctatgccaaataacaggccaattatttttgacctg 424
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 392 catttatgaagggtaagcttgacatctatgccaaatagcaggccaattatttttgacctg 333
Query: 425 gccatatttttagtaataaaggaagcagaccacatgctgaccttttgtgaaacccacaga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gccatatttttagtaataaaggaagcagaccacatgctgaccttttgtgaaacccacaga 273
Query: 485 aatg--aaaaaaaaaaaatccgctaagttagattggttatttccttcttccttcattttt 542
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aatgaaaaaaaaaaaaaatccgctaagttagattggttatttccttcttccttcattttt 213
Query: 543 ggcagcaa 550
||||||||
Sbjct: 212 ggcagcaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 952
Length adjustment: 10
Effective length of query: 540
Effective length of database: 942
Effective search space: 508680
Effective search space used: 508680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_f10.g1 MSMg01no544_f10.g1 CHROMAT_FILE:
MSMg01no544_f10.g1 PHD_FILE: MSMg01no544_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:58 2005
(580 letters)
>mm_chr1_83055841_83056820
Length = 980
Score = 1106 bits (572), Expect = 0.0
Identities = 578/580 (99%)
Strand = Plus / Plus
Query: 1 acgaggcctctggcatccttccttgttgacatcctaactcatagttagctctaactttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acgaggcctctggcatccttccttgttgacatcctaactcatagttagctctaactttta 260
Query: 61 cttacctcttcaatcctatatttagatcctggcacgaatctggcagctttctatcagcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttacctcttcaatcctatatttagatcctggcacgaatctggcagctttctatcagcta 320
Query: 121 gtactttcaataaggcctggcatgttgtaagtacttaatgggtacctttaaaattaaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtactttcaataaggcctggcatgttgtaagtacttaatgggtacctttaaaattaaata 380
Query: 181 aatgctgagaatattttgtaacactctcttgcagatatagtcttttacagctatgaatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgctgagaatattttgtaacactctcttgcagatatagtcttttacagctatgaatat 440
Query: 241 caaacctaggtcagataaaagtactgtgtgtctatctctatgtcttagtcattgcaggtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaacctaggtcagataaaagtactgtgtgtctatctctatgtcttagtcattgcaggtc 500
Query: 301 agacaattatccatctttgggaactctctttgggaacatgcccctttatgaaaatgttct 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 agacaattatccatctttgggaactctttttgggaacatgcccctttatgaaaatgttct 560
Query: 361 cagaagaattcgtggtacaaactggcatcaaaagggacatggcaggcagccctaaaatga 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagaagaattcatggtacaaactggcatcaaaagggacatggcaggcagccctaaaatga 620
Query: 421 gcaatctcactttaaagcacagatgttctcttcatggttccctgggattcttaattcact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcaatctcactttaaagcacagatgttctcttcatggttccctgggattcttaattcact 680
Query: 481 agaaaaacctttaaagttgtagtaaaataattatgtgctgtctaatgttaacaatacaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaaaaacctttaaagttgtagtaaaataattatgtgctgtctaatgttaacaatacaat 740
Query: 541 tctgtggcagcctggcctaaacagcagcaagggcgaagct 580
||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tctgtggcagcctggcctaaacagcagcaagggcgaagct 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
