NGGACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTGGTTCCCTAAGCCAAGATCTATGTTTTTCCAGGATTCTC
TCTATCATTTACTAATATGTAACAATTTGAAGTGTCATTCATCTTTATAG
CATTTTCCTGCTTTGTCTGCAGATAGATTCAAAATCGGATAGGAAGGGGG
TTGCAGTGTCTCTAACATGTTGCTTATGTGACTTCTGGGATGTCAGACAG
GAAGCAGGCAGACAGTGTTCATTCTCTGGTGTTTGCAGTGGCAGTAAAAC
CCTTCCCCTTTCTTATGGTGAATTGGTTTCTGAACATTCTGCCATGTGAG
CACCACCACGACTCTAGAGGGGTGACAGCAAAGGCAGGGAAGGAGGAAGG
TACTTAAAACCATTACTAACACTCTATATCCTTTTGCCATGACAAAACCA
TGCATGCAATCGCAAGAGAGTGTGAATGCAATAATGTTACAGAAAGGCAA
GCAATCCAGAACCTACCAGTTTAAATAGTCTAGAAAATTCTCAAGCCTTG
TATTCAAATATCTCTACTCATAATTAAAATTCCTGGAATAATAAACTCTT
ATAAGATACAATAGACATGTTATCTGTGTTCCAAGGATGGTACTGGGCAC
ATATCCGATCAATATTACTCTGTGGTTCCGATAAATCTTGCCAACTCTAC
TCAAAGTGCTTAAAGAAGAAATATCACTAATTATGCAAGTTTGTTTAGGA
GGGAGTGCCACT

GGCACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTAAGAGCAATCTGTGTGGT
TAAATCAGTTAAATCAGTCTGGTTAAAAATCCAGAGCAGAAGACTTTTCT
ACACTTTTGAAGGATTAATGCCACTTTCCCCTCAAAGTAGCCATAGACCT
GAAAGGGAAGAAGTTCTTCAAAACTTGTTACATCAAGCTAGTATTTCCCA
GTGAGTAAAACTGAATAAGATCATATTAAAAAGGAGGAGGAGAAAAATGA
AGGAAAGCAAGAGGAAGAAACAGTGGAGGAAGATAGAAGGAAGAGCAGCA
GGAGGAGAAGGAGGTCAAGCAGGAGGAGAAGGAGAAATCCTGTAGAATGA
CAGCGCAGCGAAATCAACACATCAAATTCAACAGTACAAAAAAAGGATCT
TAAATAATGATCAAGTATGAAGAGAAACATCATCTCAACAGATGCAAAAA
AATTAAATAAACCAACATGCTATGTGATTAAAAACCTGGATAAATTCGGT
ACAAAAGGAACACACCTCAACATTATACAGATTAAGTAAAGCAACTACAT
AAAACCATGACCTGAGGCAGAACTGGAAAGGATTGCATCCCCATGTTTAG
GAACAACATGAGGGCATCCACTGTCACTAGACTGTCAACTCAACTAAGCA
TAGAAGATTCAGTCAAAGCAATTAAGCAAAACACATGAAAGAGAAAGAAC
AAAGTCTAGTCAATTCTG

Query= MSMg01no544_n08.b1 MSMg01no544_n08.b1 CHROMAT_FILE:
MSMg01no544_n08.b1 PHD_FILE: MSMg01no544_n08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:38 2005
         (624 letters)



>mm_chr1_140171230_140172253
          Length = 1024

 Score = 1149 bits (594), Expect = 0.0
 Identities = 612/618 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctggttccctaagccaagatctatgtttttccaggattctctctatcatttacta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctggttccctaagccaagatctatgtttttccaggattctctctatcatttacta 264

                                                                       
Query: 65  atatgtaacaatttgaagtgtcattcatctttatagcattttcctgctttgtctgcagat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atatgtaacaatttgaagtgtcattcatctttatagcattttcctgctttgtctgcagat 324

                                                                       
Query: 125 agattcaaaatcggataggaagggggttgcagtgtctctaacatgttgcttatgtgactt 184
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 325 agattcaaaatcggataggaagggggttgcagtgtctctaaaatgttgcttatgtgactt 384

                                                                       
Query: 185 ctgggatgtcagacaggaagcaggcagacagtgttcattctctggtgtttgcagtggcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgggatgtcagacaggaagcaggcagacagtgttcattctctggtgtttgcagtggcag 444

                                                                       
Query: 245 taaaacccttcccctttcttatggtgaattggtttctgaacattctgccatgtgagcacc 304
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 445 taaaacccttcccctttcttatggtgaattggtttccgaacattctgccatgtgagcacc 504

                                                                       
Query: 305 accacgactctagaggggtgacagcaaaggcagggaaggaggaaggtacttaaaaccatt 364
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 accacaactctagaggggtgacagcaaaggcagggaaggaggaaggtacttaaaaccatt 564

                                                                       
Query: 365 actaacactctatatccttttgccatgacaaaaccatgcatgcaatcgcaagagagtgtg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 actaacactctatatccttttgccatgacaaaaccatgcatgcaatcgcaagagagtgtg 624

                                                                       
Query: 425 aatgcaataatgttacagaaaggcaagcaatccagaacctaccagtttaaatagtctaga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aatgcaataatgttacagaaaggcaagcaatccagaacctaccagtttaaatagtctaga 684

                                                                       
Query: 485 aaattctcaagccttgtattcaaatatctctactcataattaaaattcctggaataataa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaattctcaagccttgtattcaaatatctctactcataattaaaattcctggaataataa 744

                                                                       
Query: 545 actcttataagatacaatagacatgttatctgtgttccaaggatggtactgggcacatat 604
           ||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 745 actattataagatacaatagacatggtatctttgttccaaggatggtactgggcacatat 804

                             
Query: 605 ccgatcaatattactctg 622
           ||||||||||||||||||
Sbjct: 805 ccgatcaatattactctg 822


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)