XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACCT
GAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAAATGTTCAACATCCT
TAATCATCAGGGAAATGCAAATCAAAACAACCCTGGGATTCCACCTCACA
CCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCA
TGGATGTGGAAAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGC
TTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCTCAGAAAATTGAAC
ATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGA
AGATGCCCCAACTGGTAAGAAAGTAATCTTTCAACTAACCTAAAAAAAAA
AAAGTCTCATGAACAGAATTCCAAATCTAACAACAACAACAACAAAATAA
TTGGAAGCAACAATTGCAACAATTGCTTTTCCTTAATATAGCTTAATATC
AATGGATTTAATTCCCCAATAAAAAGATATAGACTAACAAATTGGCTATG
TAAACAGGACCCAACAATTTGCTGCATACAGGAAACCTACTTCAGGGACA
AAGAAATACATTACCTCAGAGTCAAAGGCTAGAAAACAATTTTCCAAGCA
AGGGATCCTGGAAACAATCTGGAGTAGCCTTTCTAATATTGAATAAAATC
ATCTTTCAATCTAAAGTTATCAAAAAAGATAAGGAGG

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTGAGATGAAGGCCACCCAGGTCTACAGAGAAACCCTG
TCTCAAAAAAACAAAAAACAGAACAAAACAAAAAACAAAAAGAAAAAACA
AACAAGCATATAACTGGAGAAATTAATCATTAAACCATACATTCATACAC
ACATATTTATATACATTTATATATATATATGTATGTGCATAGACATTTCA
ATTGTCAAAATGAAAATGCCAGAAACCATTATCAGTGTGTCAGTGTGTGG
AGAACTTTAATGTAAAATTTGGATAGAATATAAAGATGCAGAAGCAGAGG
CTTCCCTATGTGAAATTCTACATTGGTAGAATTACTGTAATTATTTGACT
ATTTTCTTAGTTCTAGTTAAGTTTACCTTTATATTTTTATTTGATTATTC
TTCTGCTTCTTATTTAGTTTCTTTATAGTCCTAGATCTCAAATCCAGGGT
CTTTCATATGCTAGGCAAGTGATCTAATATGGAGCCATACTACATTATAC
TTGCCCTTTAATGTGCAAGTGAAGGGCAAACAAAGAACTCCAAGTGCTTC
TTTTGTCATTTTTCTGATATATGGACTTACACAAATGAAAAAATTTTAAT
TACCTACAAATTAGAAGAATTTTATAAAATGTACCAAAACATTTCTTTCT
TGCCTTTTTAAACCATATAAATTATGATATATTTATGGTACTT

Query= MSMg01no545_a04.g1 MSMg01no545_a04.g1 CHROMAT_FILE:
MSMg01no545_a04.g1 PHD_FILE: MSMg01no545_a04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:52 2005
         (499 letters)



>mm_chr1_8080939_8081837
          Length = 899

 Score =  785 bits (406), Expect = 0.0
 Identities = 492/558 (88%), Gaps = 59/558 (10%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagatgaaggccacccaggtctacagagaaaccctgtctcaaaaaaacaaaaaacagaa 60
           ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 tgagatggaggccaccctggtctacagagaaaccctgtctcaaaaaaacaaaaaacagaa 201

                                                                       
Query: 61  caaaacaaaaaacaaaaagaaaaaacaaacaagcatataactggagaaattaatcattaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 caaaacaaaaaacaaaaagaaaaaacaaacaagcatataactggagaaattaatcattaa 261

                                                                       
Query: 121 accatacattcatacacacatatttatatacatttatatatat----------atatgta 170
           |||||||||||||||||||||||||||||||||||||||||||          |||||| 
Sbjct: 262 accatacattcatacacacatatttatatacatttatatatatgtgtgtgcatatatgtg 321

                                                                       
Query: 171 tgtg------------------------------------------------c-atagac 181
           ||||                                                | ||||||
Sbjct: 322 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttatatgctatagac 381

                                                                       
Query: 182 atttcaattgtcaaaatgaaaatgccagaaaccattatcagtgtgtcagtgtgtggagaa 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atttcaattgtcaaaatgaaaatgccagaaaccattatcagtgtgtcagtgtgtggagaa 441

                                                                       
Query: 242 ctttaatgtaaaatttggatagaatataaagatgcagaagcagaggcttccctatgtgaa 301
           |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 442 ctttaatgtaaaatttggatagcatataaagatgcagaagcaggggcttccctatgtgaa 501

                                                                       
Query: 302 attctacattggtagaattactgtaattatttgactattttcttagttctagttaagttt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 attctacattggtagaattactgtaattatttgactattttcttagttctagttaagttt 561

                                                                       
Query: 362 acctttatatttttatttgattattcttctgcttcttatttagtttctttatagtcctag 421
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 562 acctttatatttttatttgattattcttctgcttcttatttagtttctttataggcctag 621

                                                                       
Query: 422 atctcaaatccagggtctttcatatgctaggcaagtgatctaatatggagccatactaca 481
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 622 atctcaaatccagggtctttcatatgctaggcaagtgatctaatatggagccataccaca 681

                             
Query: 482 ttatacttgccctttaat 499
           ||||||||||||||||||
Sbjct: 682 ttatacttgccctttaat 699


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)