BAC Information

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BAC

Clone NameMSMg01-545C22
Chromosome1 (Build37)
Map Location 89,555,802 - 89,704,100
singlet/doubletdoublet
Overlap geneInpp5d, Atg16l1, Sag
Upstream geneNppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2
Downstream geneUsp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545C22.T7 (MSMg01no545_c22.b1)MSMg01-545C22.TJ (MSMg01no545_c22.g1)
ACCAG610305AG610306
length733743
length of high quality
(start - end)		641 (38 - 678)381 (67 - 447)
definitionCHROMAT_FILE: MSMg01no545_c22.b1 PHD_FILE: MSMg01no545_c22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:05 2005CHROMAT_FILE: MSMg01no545_c22.g1 PHD_FILE: MSMg01no545_c22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,703,607 - 89,704,100)(89,555,802 - 89,556,182)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAC
TGGGAGCAAGACCACCCTCCTATTACCCTGGAAAGGAGTGGGAGGGACAG
GAACAGGTGGAAAAGGGTGGCCTTGTGAAACCGAAGGATAGACTTCTGGC
AACTCACGCATAGCTAAGCACACCTTCTTGGATAAAATAGCCAATCATGC
ACAAGATCCAGCGTCAGTCATGAGATCCCATGCTAAGAGGAGGCCAGCTC
AAATGGGTGATTCCTTTTTCACCCTTCTCTTCCCGCCTCCCATCTGTCTT
TTACTTTAACAAGTCTTTAAGTAGGTATTCATTTTACTTAGATGTGTATA
AATCTTTTGCCTACATGTATGCATTATGTATGTTCCTGGTGCCTGCAGAA
GTCAGAAGAAGGCATCTGATGCTCTGGAACTAGAGTTATGAATGGTTGTG
AGTTACCATGTAGGTGCTGGGAATTGAACCCAGGACATCTGAAGAAGCAG
CAGGTGTTCTTTAACTATTGAGCCATCCCTCTAGCAGGCCAGCCAGGCAG
CTAGCCTGCATGACTTCCTTTGACAAGTGCTTCTGTGTAGCTCTGGCTAG
CCTTGAACTTAGGATCCTCATGAGTATTGGAATCAGAGATCTGTGTTGCC
ACTTCCAGCTCAAGGGATGTTTCTTGATTGGTCTGATCCAGTTCTGAGCA
TCTAATTCCTTTGGCTTGTGATCAGCATAGGGT

GTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATGCCTGCCAAGTGGAAGAGGAGAGTCACCGTGG
AGCAGGGGCCTCACGGTCCATGGGTATTGTGGGGTATCATTCCTAAGGGG
CACAGTGAGGGTACATCAGTAAACAGCTCAGAAGGCTGTTAGAGGCCCAC
AGCTAACTCGAGACTTTTGGGGTTCCTTCTCTATTTCAAAATGACTTGGT
GTATCTTTTAAGGAAGGCCTTAGCTGCAGAATGAGGAACAGAAGCTGGCG
GCCTAGACGCTAAGAATCCAGAGCCACGCCCCTCTGCTGGCAGGGAACTA
TGAACTAGGCCTTGATCTGAGCCTCATGTTCCATGTGACACACAGGTGCT
TCTCTGCCATCATGATTGTCCTCTGGTTCATTCACTCCTTTGAGTTTAGC
CGGTGAGAGCCCCAGCCAGGTGGTAAGACAGTGAGAGGAAGAATATTGAG
AAACAGGGGTGGGGCCTCTGGCACTGGCTCCCTCCTGCTGGGTGGTCTCA
TNGGGGCTCCCACACTATCCTTCTGGTTGGGAGGTTCCCAGGGGGGGAAG
GGGGTAAAACGGGCTTCCCCCCTGCGGGTTAAACTCTTAAAAATTTTTTC
TTCTTTCTAATAAAAAAAAAATTCTCCCCCCAAAAGGCCGGTTTTTTTAT
ATTAAACACCCCCGCGGTTCCTCCGGCGAAGAGAGAAAAATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_c22.b1 MSMg01no545_c22.b1 CHROMAT_FILE:
MSMg01no545_c22.b1 PHD_FILE: MSMg01no545_c22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:05 2005
         (641 letters)



>mm_chr1_89703607_89704647
          Length = 1041

 Score =  901 bits (466), Expect = 0.0
 Identities = 487/494 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaactgggagcaagaccaccctcctattaccctggaaaggagtgggagggacagg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gaattcaactgggagcaagaccaccctcctattaccctggaaaggagtgggagggacagg 435

                                                                       
Query: 65  aacaggtggaaaagggtggccttgtgaaaccgaaggatagacttctggcaactcacgcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aacaggtggaaaagggtggccttgtgaaaccgaaggatagacttctggcaactcacgcat 375

                                                                       
Query: 125 agctaagcacaccttcttggataaaatagccaatcatgcacaagatccagcgtcagtcat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 374 agctaagcacaccttcttggataaaatagccaatcatgcacaagatccagcatcagtcat 315

                                                                       
Query: 185 gagatcccatgctaagaggaggccagctcaaatgggtgattcctttttcacccttctctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gagatcccatgctaagaggaggccagctcaaatgggtgattcctttttcacccttctctt 255

                                                                       
Query: 245 cccgcctcccatctgtcttttactttaacaagtctttaagtaggtattcattttacttag 304
           || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 254 ccggcctcccatctgtcttttactttaacaagtctttaagtaagtattcattttacttag 195

                                                                       
Query: 305 atgtgtataaatcttttgcctacatgtatgcattatgtatgttcctggtgcctgcagaag 364
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 194 atgtgtataaatcttttgcctacatgtttgcattatgtatgttcctggtgcctgcagaag 135

                                                                       
Query: 365 tcagaagaaggcatctgatgctctggaactagagttatgaatggttgtgagttaccatgt 424
           ||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 134 tcagaagaaggcagctgatgccctggaactggagttatgaatggttgtgagttaccatgt 75

                                                                       
Query: 425 aggtgctgggaattgaacccaggacatctgaagaagcagcaggtgttctttaactattga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  aggtgctgggaattgaacccaggacatctgaagaagcagcaggtgttctttaactattga 15

                         
Query: 485 gccatccctctagc 498
           ||||||||||||||
Sbjct: 14  gccatccctctagc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no545_c22.g1 MSMg01no545_c22.g1 CHROMAT_FILE:
MSMg01no545_c22.g1 PHD_FILE: MSMg01no545_c22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:05 2005
         (381 letters)



>mm_chr1_89555602_89556382
          Length = 781

 Score =  714 bits (369), Expect = 0.0
 Identities = 378/381 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcctgccaagtggaagaggagagtcaccgtggagcaggggcctcacggtccatgggta 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 atgcctgccaagtggaagaggagagtcaccggggagcaggggcctcacggtccatgggta 260

                                                                       
Query: 61  ttgtggggtatcattcctaaggggcacagtgagggtacatcagtaaacagctcagaaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtggggtatcattcctaaggggcacagtgagggtacatcagtaaacagctcagaaggc 320

                                                                       
Query: 121 tgttagaggcccacagctaactcgagacttttggggttccttctctatttcaaaatgact 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 tgttagaggcccacagctaactcgagacctttggggttccttctctatttcaaaatgact 380

                                                                       
Query: 181 tggtgtatcttttaaggaaggccttagctgcagaatgaggaacagaagctggcggcctag 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 tggtgtatcttttaaggaaggccttagctgcagaatgaggaacaaaagctggcggcctag 440

                                                                       
Query: 241 acgctaagaatccagagccacgcccctctgctggcagggaactatgaactaggccttgat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acgctaagaatccagagccacgcccctctgctggcagggaactatgaactaggccttgat 500

                                                                       
Query: 301 ctgagcctcatgttccatgtgacacacaggtgcttctctgccatcatgattgtcctctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgagcctcatgttccatgtgacacacaggtgcttctctgccatcatgattgtcctctgg 560

                                
Query: 361 ttcattcactcctttgagttt 381
           |||||||||||||||||||||
Sbjct: 561 ttcattcactcctttgagttt 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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