XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACCTTTTTCCCAGACATTTGGAGTATATTTAATGAAGCATAAGGTTTGTT
TGTTTGTTTGTTTGTTTGCTTTGTTTTGTTTTGTTTTGTGCTGTAAGAAA
CATATTTAAATATTAATAAATCTTTTCTAATCTGATTAAAGGGAATATCT
TTTCAGAGTCTGGAGACATAGGTTTGCAGTTAAGAGCACATGATATTTTT
GCTGGGGATGCAAGTGCAGTGAGTGGGTCACCACCACTAAGAATTCTGCT
CTAGGAGATCCAGTGCTTTCTTCTAGCCTCTAAGAGCACCGTATTCATGG
GGACAAAGTCTACACACAGACAAGCACAAGCATACATAATTAACATTTTA
AATAAAATATTTAAAAAGGACAAAGCAGTATATTTTTACATGCTTGTCTA
AAGCTGAAATTTGTAACAACTATATGCAACTAATAATTTAAATGATTTAA
ATTTTTAATTGATTACAGTGTTCTGTTCTTATAAATATATGCATCTATAT
AATATTTTCTAGGTATACTTATGTCTCATTGCTTATAGATAAACATAGAA
AGAGTGGGTTAATTCAAAACCAAATATTCATTTGGTTCTCCTTCAAATTT
TCTACCTAAAACACATTAGAATTCTGGAAATTTTCTTTCTGTAATTCTAT
TATTTGTTGGCTTTGGAATTTAAGGGAGCCTN

ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTTTTAAT
GGGGTTATATGATTTTCTGGACATAGTACTAATGGAGGATCCTGCAATAC
CTCTCCTGGGCATATATCCAGAAGATGTTCCAACCGGTTAAAAGGACACA
TGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAA
AGAACCCAGATGCCCCTCAACAGAGGAATGGATAAAAAAAATGTGGTACA
TTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAA
TTCATAGGCAAATGGATGGACCTGGAAGGCATCATCCTGAGTGAGGTAAC
CCAATCATAAAAGAACTCAAATGATATGTACTCACTGATAAGTGGATATT
AGCCCAGAAACTTAGTATAGCGAGATATAAGGTACAATTTGCAAAACACA
TGAAACTGAATAAGAACAAAGACCAAAGTGTGGACACTTTGCCCCTTCTT
AGAATTGGAAACAATCACCCATTGAAGGAGTTACAGAGACAAAGTTTTGG
ATCTGAGACAAAAGGATGGACCATCTAGTGACTGCCATATCCAGAGATCC
ATCCCATAATTAGCCTCCTAATGATGACACCATTTCATACACTAACAAGA
TTTTGCTGAATGGACCCCGATATAACTGTCTC

Query= MSMg01no546_a08.b1 MSMg01no546_a08.b1 CHROMAT_FILE:
MSMg01no546_a08.b1 PHD_FILE: MSMg01no546_a08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:10 2005
         (681 letters)



>mm_chr1_81062844_81063924
          Length = 1081

 Score = 1127 bits (583), Expect = 0.0
 Identities = 614/627 (97%), Gaps = 5/627 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacctttttcccagacatttggagtatatttaatgaagcataaggtttgtttgtt 64
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gaattcacctatttcccagacatttggagtatatttaatgaagcataaggtttgtttgtt 563

                                                                       
Query: 65  tgtttgtttgtttgctttgttttgttttgttttgtgctgtaagaaacatatttaaatatt 124
           |||||||||||||||     ||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tgtttgtttgtttgc-----tttgttttgttttgtgctgtaagaaacatatttaaatatt 508

                                                                       
Query: 125 aataaatcttttctaatctgattaaagggaatatcttttcagagtctggagacataggtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aataaatcttttctaatctgattaaagggaatatcttttcagagtctggagacataggtt 448

                                                                       
Query: 185 tgcagttaagagcacatgatatttttgctggggatgcaagtgcagtgagtgggtcaccac 244
           |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 447 tgcagttaagagcacatgctatttttgctggggatgcaagtgcagtgagtggctcacaac 388

                                                                       
Query: 245 cactaagaattctgctctaggagatccagtgctttcttctagcctctaagagcaccgtat 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 387 cactaagaattctgctctaggagatccagtgctttcttctagcctctaagagcaccatat 328

                                                                       
Query: 305 tcatggggacaaagtctacacacagacaagcacaagcatacataattaacattttaaata 364
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 327 tcatggggacaaagtctacacacagataagcacaagcatacataattaacattttaaata 268

                                                                       
Query: 365 aaatatttaaaaaggacaaagcagtatatttttacatgcttgtctaaagctgaaatttgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aaatatttaaaaaggacaaagcagtatatttttacatgcttgtctaaagctgaaatttgt 208

                                                                       
Query: 425 aacaactatatgcaactaataatttaaatgatttaaatttttaattgattacagtgttct 484
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 atcaactatatgcaactaataatttaaatgatttaaatttttaattgattacagtgttct 148

                                                                       
Query: 485 gttcttataaatatatgcatctatataatattttctaggtatacttatgtctcattgctt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 gttcttataaatatatgcatctatataatattttctaggtatacttatgtctcattgctt 88

                                                                       
Query: 545 atagataaacatagaaagagtgggttaattcaaaaccaaatattcatttggttctccttc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  atagataaacatagaaagagtgggttaattcaaaaccaaatattcatttggttctccttc 28

                                      
Query: 605 aaattttctacctaaaacacattagaa 631
           ||||||||| |||||||||||||||||
Sbjct: 27  aaattttctgcctaaaacacattagaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)