XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
CTATCCCATCCATGTGCTGGTTCCTGTATTGACTTTCTATTCTGTCTTTG
TCCTGTCACAGTGCAAGATATGAACAGTGCCTTCATAGGGTGAGTATTGA
CTCCTCTGATCCTGGTGACATTCCTAACTGCAATCCTCCACACAGAGGCA
CATGTGGTCTTCCAGGCAGGTAAGCTGACACCTAGGTTGTTTTTGGATCA
CGAATTTTGCCTTCACACAATCCCTCCCACTCTCCTCTTGCTTTCCTACA
AGATGTAGAGAATGGAGTGAGGGCAGCATCTCCGGGAACCACCCAGTACA
CCACACTAGGCCACTGTACTGCTCTTCTGCCCTGCACTGTTGTTCAGTAA
TTGGTGATCTCATTCTGAGGTTGACAGAGGGTGTGGCATTCACAGCACTA
AGGGTCACAGAGGCAAGGATGTGGCTATATGAGCCTCCTGTGTGCCATTT
TCTTTAATGACATCTCCCAGTTTCTAAAGTTGGAATTCCTGGATGATTCT
CTGTAGGCTTAGTGTTGCTGAGTCCTGGACCTATAAATAAATCCCACTTT
GTCAGATACTTTGTCCTTAGATTCATTCCAGAGTGGTATCTGTACTATTT
AGAGCTGTGGGATCCTGAATTTCATAGGGGTGAATCTTGGGAATATCAAG
CTCTGAGCCTTGTTCTCAGTCAAACAAGTTTGAAAATGGGTCAT

AATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTATAACCCCATGGGACAAGGAATAGTTG
AATGTGCTCATTGCACTTTAAAAAAATGGCTATATAATCTCGTTCTTTGT
ATATTCACAACAGTAATGGTTTAAGATAATATTTTGTATTTTTGGAGAAT
GTGCATTTCAAATTGTAAAAAATTTGCTCTTGGTGTCCTCAGTTCCTACC
TGTTTCCACATAATGGTGTTAATTCTTGATGACCTATACTTAATCAATTG
CTGCAAATGAATACTATTATTTCTGGTTAATAAATAAATTATGCACATGT
GACTATTAATAACTTTTCAAGCTTTCTAGTTACAACCGCTCAAGAGAAAC
AATTGAAAGTGTAATTAGTCACTGCCATTGTTATATTAAAACTGACTATA
ACAATCAAGTATTTGAGATGTTTTGTCAAAAAATTAATAATTCTCAAAGA
CAGGGTATTGTGGAACTTTAAAAACTCTTCTTAAAAAAAACAAAGAAAGG
GGGAAATTGTATCCCTGTGCACATTATTAAATATATCCCCGTGCACATTA
TTAAATCATACTTTTATTTTAAGAATTTTGAAATTTGGATGTCAAAGAAC
TTAATAAATGCCTCATAGTGTCTTAAAACCAGACATAATCATATCTAGGT
AAGATGAAAAAGATCTACTTATTGGCATATGGCTTGATCCTGAACAGCT

Query= MSMg01no546_b06.b1 MSMg01no546_b06.b1 CHROMAT_FILE:
MSMg01no546_b06.b1 PHD_FILE: MSMg01no546_b06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:15 2005
         (671 letters)



>mm_chr1_46076000_46077070
          Length = 1071

 Score = 1174 bits (607), Expect = 0.0
 Identities = 652/667 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccctatcccatccatgtgctggttcctgtattgactttctattctgtctttgtcc 64
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 205 gaattccctatcccatccatgtgctggttcctgtattgacattctattctgtctttgtcc 264

                                                                       
Query: 65  tgtcacagtgcaagatatgaacagtgccttcatagggtgagtattgactcctctgatcct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtcacagtgcaagatatgaacagtgccttcatagggtgagtattgactcctctgatcct 324

                                                                       
Query: 125 ggtgacattcctaactgcaatcctccacacagaggcacatgtggtcttccaggcaggtaa 184
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggtgacattcctaaccgcaatcctccacacagaggcacatgtggtcttccaggcaggtaa 384

                                                                       
Query: 185 gctgacacctaggttgtttttggatcacgaattttgccttcacacaatccctcccactct 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 385 gctgacacctaggttgtttttggatcacgaattttgccttcacacaatcccttccactct 444

                                                                       
Query: 245 cctcttgctttcctacaagatgtagagaatggagtgagggcagcatctccgggaaccacc 304
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cctcttgctttcctacaagatctagagaatggagtgagggcagcatctccgggaaccacc 504

                                                                       
Query: 305 cagtacaccacactaggccactgtactgctcttctgccctgcactgttgttcagtaattg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 505 cagtacaccacactaggccactgtactgctcttctgccctgcactgttgttcagtaaatg 564

                                                                       
Query: 365 gtgatctcattctgaggttgacagagggtgtggcattcacagcactaagggtcacagagg 424
           ||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||
Sbjct: 565 gtgatctcattctgaggttgacagagggcatggcattcacagcactgagggtcacagagg 624

                                                                       
Query: 425 caaggatgtggctatatgagcctcctgtgtgccattttctttaatgacatctcccagttt 484
           |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 625 caaggatgtggctatacgagcctcctgtgtgccattttctttaatggcatctcccagttt 684

                                                                       
Query: 485 ctaaagttggaattcctggatgattctctgtaggcttagtgttgctgagtcctggaccta 544
           ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctaaagttggaatccctgaatgattctctgtaggcttagtgttgctgagtcctggaccta 744

                                                                       
Query: 545 taaataaatcccactttgtcagatactttgtccttagattcattccagagtggtatctgt 604
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 745 taaataaatcccactttgtcagatactttgtccttagattcattccagggtggtatctgt 804

                                                                       
Query: 605 actatttagagctgtgggatcctgaatttcataggggtgaatcttgggaatatcaagctc 664
           |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 805 actatttagagctgtgggattctgaatttcataggggtgaatcttggaaatatcaagctc 864

                  
Query: 665 tgagcct 671
           |||||||
Sbjct: 865 tgagcct 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)