Query= MSMg01no546_e12.b1 MSMg01no546_e12.b1 CHROMAT_FILE:
MSMg01no546_e12.b1 PHD_FILE: MSMg01no546_e12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:31 2005
(639 letters)
>mm_chr1_130255832_130256872
Length = 1041
Score = 1067 bits (552), Expect = 0.0
Identities = 607/632 (96%), Gaps = 16/632 (2%)
Strand = Plus / Minus
Query: 12 tgagaccctctcagtttaaaaaa-aaaaaaaagtcaaatggtatgcagattttactctgt 70
||||||||||||||||||||||| |||| ||||||||||||||||||||| |||
Sbjct: 1041 tgagaccctctcagtttaaaaaagaaaagaaagtcaaatggtatgcagat-------tgt 989
Query: 71 cagaatatatctatctctgtttttttttttaagtgtatgtgtatgcacatgtgttcttag 130
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 988 cagaatatatctatctctg----tctttttaagtgtatgtgtatgcacatgtgttcttag 933
Query: 131 aagtcaaaagagggtatcaaagtcgctaagctggagttaaaggtggtgactgtctcatgt 190
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932 aagtcagaagagggtatcaaagtcgctaagctggagttaaaggtggtgactgtctcatgt 873
Query: 191 agctgctaagaaacaagcttgggtccgctgaggaatgagtta--ctctaagccttcgctc 248
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct: 872 agctgctaagaaacaagcttgggtccgctgcggaatgagttactctctaagcctttgctc 813
Query: 249 ctgtcctccacctgacttttaagggactctctcctgtagtttggtttgctcataccttac 308
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 812 ctgtcctccacctgacttttaaggggctctctcctgtagtttggtttgctcataccttac 753
Query: 309 ttcctccagatgcacaattcacagtaggtttaaccctgagtgaccaaaaacaaaacaaaa 368
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 752 ttcctccagatgcacaattcacagtaggtttaaccctgagtgaccaaaaacaaaac-aaa 694
Query: 369 aaaaccc-aaaaagtctatacataaactctgggggtaaagggagagagggaggggttagc 427
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 aaaacccaaaaaagtctatacataaactctgggggtaaagggagagagggaggggttagc 634
Query: 428 tcctcaagccaaaacaaccagagggtgggtgcgactacattgcgcatgggcaaaagcttc 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tcctcaagccaaaacaaccagagggtgggtgcgactacattgcgcatgggcaaaagcttc 574
Query: 488 atggagtatgcttttggcgcgaaaagtgcgtgcggtgggcggggctctggacggaatcgc 547
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 573 atggcgtatgcttttggcgcgaaaagtgcgtgcggtgggcggggctctgtacggaaccgc 514
Query: 548 cattgattggacgggtttggcgcgaagtagctcagctcctaccctgttattggctgaggt 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 cattgattggacgggtttggcgcgaagtagctcagctcctaccctgttattggctgaggt 454
Query: 608 gagagggcggggctagccggaggcgcgcgcga 639
||||||||||||||||||||||||||||||||
Sbjct: 453 gagagggcggggctagccggaggcgcgcgcga 422
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1041
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1031
Effective search space: 648499
Effective search space used: 648499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_e12.g1 MSMg01no546_e12.g1 CHROMAT_FILE:
MSMg01no546_e12.g1 PHD_FILE: MSMg01no546_e12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:32 2005
(533 letters)
>mm_chr1_130136554_130137486
Length = 933
Score = 1007 bits (521), Expect = 0.0
Identities = 530/533 (99%)
Strand = Plus / Plus
Query: 1 acttcctatgaaaaccattttcattaaaaagcaatttgggtctcttaagttagtaccatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttcctatgaaaaccattttcattaaaaagcaatttgggtctcttaagttagtaccatt 260
Query: 61 ctgaacacatgatttatgatgaagccttgtgctagtctctgtcattcccactaattctgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgaacacatgatttatgatgaagccttgtgctagtctctgtcattcccactaattctgt 320
Query: 121 tgcagagtacccacaccactatactacccacctataagtcaccttggagctgctctgcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcagagtacccacaccactatactacccacctataagtcaccttggagctgctctgcat 380
Query: 181 ttttttttagttatttacttattttatgtgtgtgagtacactgtagctgtcctcagacac 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttttttaattatttacttattttatgtgtgtgagtacactgtagctgtcctcagacac 440
Query: 241 accaaaagagggcatcagatcccattacagatggttgtgagccattatatggttgctggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accaaaagagggcatcagatcccattacagatggttgtgagccattatatggttgctggg 500
Query: 301 aattgaactcaggacctctagaagtcaatgctcttaaccactgagccatctctccagccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aattgaactcaggacctctagaagtcaatgctcttaaccactgagccatctctccagccc 560
Query: 361 tgtattgttattctttattgctctgtattgtttcctagttttgaccttacagttcaagag 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 tgtattgttattctttattgctctgtattgtttcctagttttgaccttacagctcaagag 620
Query: 421 gagtgatgctgggagctgctagagatgtcattcataatacatgtgattgaagagaattga 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 gagtgatgctgggagctgctagagatgtcattcagaatacatgtgattgaagagaattga 680
Query: 481 gttgtcctctggcctgtttgagtttacacctaccttaaataataaaaattttt 533
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gttgtcctctggcctgtttgagtttacacctaccttaaataataaaaattttt 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
