Query= MSMg01no546_i20.b1 MSMg01no546_i20.b1 CHROMAT_FILE:
MSMg01no546_i20.b1 PHD_FILE: MSMg01no546_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:53 2005
(685 letters)
>mm_chr1_126499840_126500924
Length = 1085
Score = 816 bits (422), Expect = 0.0
Identities = 422/422 (100%)
Strand = Plus / Minus
Query: 263 acaaagtcagatatggtagcaccctaatttcttctgctcctatgatgagattgagagtaa 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1085 acaaagtcagatatggtagcaccctaatttcttctgctcctatgatgagattgagagtaa 1026
Query: 323 ggacagaaaggtgtactgaaactcacaggctaaacagccttgtagcagtgaatgactaaa 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1025 ggacagaaaggtgtactgaaactcacaggctaaacagccttgtagcagtgaatgactaaa 966
Query: 383 gaccctgtcccaaatggggtcaaagataaggacagacacctccggttgtttgtgaccttt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 gaccctgtcccaaatggggtcaaagataaggacagacacctccggttgtttgtgaccttt 906
Query: 443 acatgcatgtacctacactcatgaacacatacatacagacatcatacatacagaataaga 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 acatgcatgtacctacactcatgaacacatacatacagacatcatacatacagaataaga 846
Query: 503 tcaggaggagaagcttctttcctccacagcagagggcaacatagtactgtttccatccag 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 tcaggaggagaagcttctttcctccacagcagagggcaacatagtactgtttccatccag 786
Query: 563 gacaaagattagacaagtttgcttcaacatcctgctttacttccgttttcagattgagtg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 gacaaagattagacaagtttgcttcaacatcctgctttacttccgttttcagattgagtg 726
Query: 623 actcatcactgtggggttcttctgttctggtgtaagcctagagtttgtatagccttacta 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 actcatcactgtggggttcttctgttctggtgtaagcctagagtttgtatagccttacta 666
Query: 683 tg 684
||
Sbjct: 665 tg 664
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space: 725625
Effective search space used: 725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_i20.g1 MSMg01no546_i20.g1 CHROMAT_FILE:
MSMg01no546_i20.g1 PHD_FILE: MSMg01no546_i20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:53 2005
(667 letters)
>mm_chr2_46800688_46801756
Length = 1069
Score = 1181 bits (611), Expect = 0.0
Identities = 651/665 (97%), Gaps = 4/665 (0%)
Strand = Plus / Minus
Query: 5 acagggaaagctgagaacacctaagaccctttgcctaccttactg-gttctacagaatcg 63
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 868 acagggaaagctgagaacacctaagaccctttgcctaccttactgcg-cctacagaatcg 810
Query: 64 acgtctttcagacacacagcccacaatacaagcgcagactgtagagtaagaatcacagtt 123
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 acatctttcagacacatagcccacaatacaagcgcagactgtagagtaagaatcacagtt 750
Query: 124 gtgtgtgtgcttttaggcttctcgtatgatctgcactcttctctagcccatggtttccta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 gtgtgtgtgcttttaggcttctcgtatgatctgcactcttctctagcccatggtttccta 690
Query: 184 cttcttggccatgtacaatatttggttctataattttcccccacttctctgtagctgaat 243
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 689 cttcttggccatgtacaatatttggttctataattttcccccacttctctgttgctgaat 630
Query: 244 aatgaaacctgtttttgccattttctacattttcaaatgtggttttgaaaaaa--ataca 301
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 629 aatgaaacctgtttttgccattttctacattttcaaatgtggttttgaaaaaaatatata 570
Query: 302 ttatttccactatttttctaaacactgtatgattcccaatatactccatgaatgtgtgcc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ttatttccactatttttctaaacactgtatgattcccaatatactccatgaatgtgtgcc 510
Query: 362 aggacgagtgaggaataaatccctgctgattcttgatatataagcataacattccatcta 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aggacgagtgaggaataaatccctgctgattcttgatatataagcataacattccatcta 450
Query: 422 attattagaaggccttacatgtattatggttcaaaatcagatgattccagaatattgata 481
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 449 attattagaaggccttacatgtattgtggttcaaaatcagatgattccagaatattgata 390
Query: 482 tttgtatctttggttcccatattttgttttagaaggaacaatatattagattttcaaagt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tttgtatctttggttcccatattttgttttagaaggaacaatatattagattttcaaagt 330
Query: 542 attaagttgttaagtgataaatgaatgtaaagtctacctagaacacttaaagtctgttgg 601
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 329 attaagttgttaagtgataaatgaatgtaaagtctacctagtacacttaaagtctgttgg 270
Query: 602 tctatagtaagatcatagacccttccaaatatagagtgtatctcagaatttctgtggcat 661
||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 269 tctatagtaagatcacagaaccttccaaatatagagtgcatctcagaatttctgtggcat 210
Query: 662 tcttt 666
|||||
Sbjct: 209 tcttt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1069
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1059
Effective search space: 695763
Effective search space used: 695763
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
