XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGGC
CCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACAT
CAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTA
GACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTA
TTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGAAACAAATTGG
AAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATA
TAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGC
TTCGGTGAAGTAGCTGGATATAAAATAAACTCAAGTCAATGGCCTTATTC
TATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAATATCCTTCTC
AATAGTCACAAATAATACAAAATATCTTGGCGTGACTCTAACTAAGGAAG
TGAAAGATCTGTACGATAAAAACTTCAAATCTCTGAAGAAAGAAATTAAG
GAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGAT
CAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATG
CAATCCCCATCAAAATTCCAACTCAATTCTTCAACAAATTGGAAGGAGCA
ATTTGCAAATTTATCTGGAATAACAAAAAACCTAGGATAGCAAAAAGT

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXAATCTTCAGCAACACTTTAGAGCAACGAAGAGGAGGTTC
GTGCATTAGCCATATTGCTTCACTAACAATGAAAGAAGACTATCTGGAGG
GACTAAACAAAAACTTTTGGCAACAAAAGTTCCTTCTGGTTTCCCCAAAG
AAAACTCTTACTAAGCCTAGACTTGTGGTTCAGCAGTACAGCCCTTGGCT
AATGTACCTGAGGACCTGGGTTCAATGCCTGGCACAAAACAAAACAGATT
ATAATGGCATGTAAACTAGAAACAACACACATCTGTCTTTGTAATTTCTC
TTTCAAGAAAAAAGAGATGGAGCAGAGCTGCAGCTCCATTGGTGTGTGGT
TGCATAGCATGGGCAAACCCTGGGTTAATCTTCAGTGCTACATAAATAAA
ACCTGCAACAGGGATGTAAGCCTGTAATTCCAGCACCCTGGGAGCAAAGG
TAGAAGGATCAAGGCAATCCTCAACTATATTTCAATTTAGAGGCCAGCCT
GGGATACCTGAGACCTTGTCTCAGAAAGAAAGAAAAAGGTCAGGGAGGAA
AGGAGAGAGGGAGGAAGGGAGGAAAAGAAGGATGGGAGGGAGGGAAGGGA
GGGAGGTTATTTTTNNTTTTTTTTTTTTTTTNNNTTTTTTGTTTGGGTTG
TGTTGCGGTTTGGTGGGTTTGGTGTTTTTGGGTGTTTTTTTTTTTGTTTT
TTTGTTN

Query= MSMg01no547_a05.g1 MSMg01no547_a05.g1 CHROMAT_FILE:
MSMg01no547_a05.g1 PHD_FILE: MSMg01no547_a05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:31 2005
         (584 letters)



>mm_chr1_140717918_140718901
          Length = 984

 Score = 1064 bits (550), Expect = 0.0
 Identities = 575/594 (96%), Gaps = 18/594 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatcttcagcaacactttagagcaacgaagaggaggttcgtgcattagccatattgcttc 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 aatcttcagcaacactttagagcaacgaagaggaggttcgtgtattagccatattgcttc 260

                                                                       
Query: 61  actaacaatgaaagaagactatctggagggactaaacaaaaacttttggcaacaaaagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actaacaatgaaagaagactatctggagggactaaacaaaaacttttggcaacaaaagtt 320

                                                                       
Query: 121 ccttctggtttccccaaagaaaactcttactaagcctagacttgtggttcagcagtaca- 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 ccttctggtttccccaaagaaaactcttactaagcctagacttgtggttcagcagtacac 380

                                                                       
Query: 180 ---------gcccttggctaatgtacctgaggacctgggttcaatgcctggcacaaaaca 230
                    |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtacagtagcccttggctaatgtacctgaggacctgggttcaatgcctggcacaaaaca 440

                                                                       
Query: 231 aaacagattataatggcatgtaaactagaaacaacacacatctgtctttgtaatttctct 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacagattataatggcatgtaaactagaaacaacacacatctgtctttgtaatttctct 500

                                                                       
Query: 291 ttcaagaaaaaagagatggagcagagctgcagctccattggtgtgtggttgcatagcatg 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcaagaaaaaagagatggagcagagctgcagctccattggtgtgtggttgcatagcatg 560

                                                                       
Query: 351 ggcaaaccctgggttaatcttcagtgctacataaataaaacctgcaacagggatgtaagc 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggcaaaccctgggttaatcttcagtgctacataaataaaacctgcaacagggatgtaagc 620

                                                                       
Query: 411 ctgtaattccagcaccctgggagcaaaggtagaaggatcaaggcaatcctcaactatatt 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgtaattccagcaccctgggagcaaaggtagaaggatcaaggcaatcctcaactatatt 680

                                                                       
Query: 471 tcaatttagaggccagcctgggatacctgagaccttgtctcagaaagaaagaaaaaggtc 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcaatttagaggccagcctgggatacctgagaccttgtctcagaaagaaagaaaaaggtc 740

                                                                 
Query: 531 agggaggaaaggagagagggaggaagggaggaaaagaaggatgggagggaggga 584
           |||||||||||||||||||||||||        |||||||||||||||||||||
Sbjct: 741 agggaggaaaggagagagggaggaa--------aagaaggatgggagggaggga 786


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)