Query= MSMg01no547_k23.b1 MSMg01no547_k23.b1 CHROMAT_FILE:
MSMg01no547_k23.b1 PHD_FILE: MSMg01no547_k23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:23 2005
(695 letters)
>mm_chr1_106513017_106514112
Length = 1096
Score = 1263 bits (653), Expect = 0.0
Identities = 683/693 (98%), Gaps = 1/693 (0%)
Strand = Plus / Plus
Query: 4 ggaattctctttttctctttcc-actaaaacaaaactttcttttttggaacccagagaat 62
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctttttctctttccaactaaaacaaaactttcttttttggaacccagagaat 263
Query: 63 ttcataagggtattttgcaaggacatagataccagcaggtatgctgaacaaaaagcctct 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttcataagggtattttgcaaggacatagataccagcaggtatgctgaacaaaaagcctct 323
Query: 123 gccttctgcatcgaccaataacttcatagaaatctccaggaggctcttatactaagttaa 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gccttctgcatcgaccaataacttcatagaaatctccaggaggctcttatactaagttaa 383
Query: 183 tgtatcctactgaccaatgaggatacagaatgaacagctttgcctttgcttttgctaaaa 242
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 384 tgtatcctactgaccaatgaggatacagaatggacagctttgcctttgcttttgctaaaa 443
Query: 243 cactcagagaatgactgctatcacattcagaagccaaatgatcttctttgctgctctagc 302
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 444 cactcagagaatgactgctatcacattcaaaagccaaatgatcttctttgctgctctagc 503
Query: 303 ctcagctatagagaacagatcattcgtggtgctaaactcaatttcttccatgttattttc 362
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 504 ctcagctatagagaacagatcattcgtggagctaaactcaatttcttccatgttattttc 563
Query: 363 atggcaatcacttcagccccaatgcaagttggaaatttgaccatcctttatattatactc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atggcaatcacttcagccccaatgcaagttggaaatttgaccatcctttatattatactc 623
Query: 423 aggcaattatctttctgatgtacaaataagaaagcaattgtccttttcaacaagctttgt 482
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aggcaattatctttctgatgtacaaataagaaagcaattgtccttttcaacaagctttga 683
Query: 483 gatgcttgccgctaagtagtccaggtgaaaaattctcctcagagcactatcctgaggggt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gatgcttgccgctaagtagtccaggtgaaaaattctcctcagagcactatcctgaggggt 743
Query: 543 cccaagaaccaggggaaaacccaacaatgacaaaactaaacaggaaaaatggggtcctta 602
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 744 cccaagaaccaggggaaaacccgacaatgacaaaactaaacaggaaaaatggggtcctta 803
Query: 603 taggccacggaatcagtaagtgccatccaactcattttaaatccaaaagctcacaaatct 662
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 804 taggccacggaatcagtaagtgccatctaactcattttaaatccaaaagctcacaaatct 863
Query: 663 tagtcatatcaatcaggctcctcatacctttcc 695
||||| ||| |||||||||||||| ||||||||
Sbjct: 864 tagtcgtattaatcaggctcctcacacctttcc 896
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1096
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1086
Effective search space: 743910
Effective search space used: 743910
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_k23.g1 MSMg01no547_k23.g1 CHROMAT_FILE:
MSMg01no547_k23.g1 PHD_FILE: MSMg01no547_k23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:23 2005
(666 letters)
>mm_chr1_106637721_106638788
Length = 1068
Score = 1143 bits (591), Expect = 0.0
Identities = 649/669 (97%), Gaps = 4/669 (0%)
Strand = Plus / Minus
Query: 1 ctacttttagaagggaagcagaaacatgagaatgtttggaaattcttgggttagctgatc 60
|||||||||||||||||||||| ||||| |||| |||||||||||||| ||||||||||
Sbjct: 686 ctacttttagaagggaagcagagccatgaaaatgcttggaaattcttggcttagctgatc 627
Query: 61 taacatacacattgctgcacatgcactgtatatcctgtacctgtgtcttatgccagaaac 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 626 taacatacacattgctgcacatgcactgtatatcctgtacctgtgccttatgccagaaac 567
Query: 121 ctcccagaaaagtagcaagtgtggactgacagtgtagtcatctttcccacacacatgctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ctcccagaaaagtagcaagtgtggactgacagtgtagtcatctttcccacacacatgctc 507
Query: 181 tgtggcacccacaggaccccaccacaccccatatgacaaggatacaatcccagtatgcaa 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tgtggcacccacaggaccacaccacaccccatatgacaaggatacaatcccagtatgcaa 447
Query: 241 tctagtagtttcttttcattcacaatgtgtaaactcagtgcaccagttttccatttttat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tctagtagtttcttttcattcacaatgtgtaaactcagtgcaccagttttccatttttat 387
Query: 301 aaaattcatattctatctgtcacctcccttctccca-tctggctctgaatatccagaatg 359
|||||| || |||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 386 aaaatttatgttctatctgtcacctcccttctcccact-tggctctgaatatccagaatg 328
Query: 360 gtttctttgttctggacttgttatctgtatcaaggaattgtgtggtaga--ttcttctgg 417
|||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||
Sbjct: 327 gtttctttgttctggacttgttatctgtatcaaggactcatgtggtagatgttcttctgg 268
Query: 418 gactgatttctttcactttaaatactgtccctgaggctttcccgagctatagagtgtggc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gactgatttctttcactttaaatactgtccctgaggctttcccgagctatagagtgtggc 208
Query: 478 agtgtttcatctgtactcaggaccttacatacaattaatcctgactagataacttgaaag 537
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 207 agtgttttatctgtactcaggaccttacaaacaattaatcctgactagataacttgaaag 148
Query: 538 tgtcagtattttgcctttccacttaacatatgagtagaacatgcctccaattattcactg 597
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 tgtcagtatcttgcctttccacttaacatatgagtagaacatgcctccaattattcactg 88
Query: 598 atctgctcagtgtcacttggctaataaattcccagagccaacatgctcagctatgtctct 657
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 87 atctgctcagtgtcacttggctaataaattcccagagccagcatgctcagctatgtctct 28
Query: 658 ctgtgtgag 666
|||||||||
Sbjct: 27 ctgtgtgag 19
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1068
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1058
Effective search space: 694048
Effective search space used: 694048
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
