BAC Information

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BAC

Clone NameMSMg01-548C10
Chromosome1 (Build37)
Map Location 3,654,928 - 3,655,298
singlet/doubletsinglet
Overlap geneXkr4
Upstream geneLOC100038975, LOC664792
Downstream geneLOC619785, Rp1h, Sox17, LOC664830, LOC664838, LOC664853
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548C10.T7 (MSMg01no548_c10.b1)MSMg01-548C10.TJ (MSMg01no548_c10.g1)
ACCAG612568AG612569
length782764
length of high quality
(start - end)
373 (47 - 419)402 (76 - 477)
definitionCHROMAT_FILE: MSMg01no548_c10.b1 PHD_FILE: MSMg01no548_c10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:59 2005CHROMAT_FILE: MSMg01no548_c10.g1 PHD_FILE: MSMg01no548_c10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TACTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACATAGGTCCTCTGCAAGAGCAGCCAGTACTCTTAACTAGTGAG
TCATCTCCCAAACTCCAATAAAGATTTTTTAAGTAACTGATCTAAACCCT
TCAAAATTACTACTACCTAAATGATTAATAGATACACAGTCACATAGGTC
CTATATTCAATCACCTTGTTAAGCTAGACTGAGATGCTCTGGAGGAATAA
TAAATGTAAGATGTTCTTTCTCATGTAGCAAATAAGTTAGCTTTGAACTT
TTCCTTTAGTTATCAGAAGAATACCACACAGAGATACCTACCGATGGTAA
ATTATTCCAACTCATGGAGAAATCCAAGTGAATTCACAGGGAGCTCTTTC
TGCGTGGATTTACAGCCATCAGCTTAACTCAGAGATCACTCACGGCCATT
GCAGGGAATTTGTGATGCTCCAGGGAAAAAAGTGTGGCCCTAAAACAACA
GTTAGCTTTTAAACCTGCAAAAGAGCTGGATTGAAAGAAAAAAATTTTTT
CTGCTTTCCTTTACCCCTAAAAAGTTTCAATTTTTGAACTTGGTTATAAT
GGAATGGATATGGTCCACAAAAGTTTCCTGATAAAAAAAATTTGTTCCTA
GAATAACTTTTTCCAACTATTTATAAATACCCCCATTTCATTCAAAAGAG
AACAAAATGTATTCAAACCTTTAATCACCTTTAAGCAAAAAAAAAATTAT
TCAGATATGGTTTGAAGAGGCTTCCTCCTAAA
ACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCTG
AGAAGCACCTGAAAAAAATTTTCAATATCCTTAATCATCAGGGAAATGTA
AATCAAAACAACCCTGAGATTTCATCTCACACCAGTCAGAATGGCTAAGA
TAAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAA
AGTCACCTGGCGGTTCCTCAGAAAACTGGATATACTACTACTGGAGGATG
CAATACTTCTCCTGGGCATATATCCAGAAAATGTTCCAACCGGTAAAAAG
GACACATGCTCCACTATGTTCATAGCAGTCTTATTTACAATAGCCAGAAG
CTGGAATGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATTTACACAATGGAATACTACTCAGCTATTAAAAGGAATGGATTT
TTGAAATTCCTAGGCAAATGGGATTTACCTGGTAGGCCATCTTCCTTGAG
TGAAGTAACTCCATTTCTAAAGGACTCAAATCAAATATGAACCCTCCTGA
TAAATTGGTATATTTAGCTCCCTAAATTTATGGTAATCTCTAAGATTTTA
ATGAAAATAATTTTGTGCATAATCCGCCTGCAATCCTGGATTAAGAGATG
TGTTTGAACCATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_c10.b1 MSMg01no548_c10.b1 CHROMAT_FILE:
MSMg01no548_c10.b1 PHD_FILE: MSMg01no548_c10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:59 2005
         (373 letters)



>mm_chr1_3654726_3655498
          Length = 773

 Score =  663 bits (343), Expect = 0.0
 Identities = 364/371 (98%), Gaps = 1/371 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattc-acataggtcctctgcaagagcagccagtactcttaactagtgagtcatctcc 62
           ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcaacaaaggtcctctgcaagagcagccagtactcttaactagtgagtcatctcc 262

                                                                       
Query: 63  caaactccaataaagattttttaagtaactgatctaaacccttcaaaattactactacct 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 caaactccaataaagattttttaagtaactgatctaaacccttcaaaattactactacct 322

                                                                       
Query: 123 aaatgattaatagatacacagtcacataggtcctatattcaatcaccttgttaagctaga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaatgattaatagatacacagtcacataggtcctatattcaatcaccttgttaagctaga 382

                                                                       
Query: 183 ctgagatgctctggaggaataataaatgtaagatgttctttctcatgtagcaaataagtt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctgagatgctctggaggaataataaatgtaagatgttctttctcatgtagcaaataagtt 442

                                                                       
Query: 243 agctttgaacttttcctttagttatcagaagaataccacacagagatacctaccgatggt 302
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 443 agctttgaacttttcctttagatatcagaagaataccacacagagatacctaccaatggt 502

                                                                       
Query: 303 aaattattccaactcatggagaaatccaagtgaattcacagggagctctttctgcgtgga 362
           ||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 503 aaattattccaactcacagagaaatccaagtgaattcacagggagctctttctgtgtgga 562

                      
Query: 363 tttacagccat 373
           |||||||||||
Sbjct: 563 tttacagccat 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)