BAC Information

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BAC

Clone NameMSMg01-548D08
Chromosome1 (Build37)
Map Location 176,061,742 - 176,145,665
singlet/doubletdoublet
Overlap geneOlfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1
Upstream geneGA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244
Downstream geneOlfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2, Grem2, Rgs7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548D08.T7 (MSMg01no548_d08.b1)MSMg01-548D08.TJ (MSMg01no548_d08.g1)
ACCAG612611AG612612
length733734
length of high quality
(start - end)		676 (47 - 722)657 (76 - 732)
definitionCHROMAT_FILE: MSMg01no548_d08.b1 PHD_FILE: MSMg01no548_d08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:04 2005CHROMAT_FILE: MSMg01no548_d08.g1 PHD_FILE: MSMg01no548_d08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(176,145,124 - 176,145,665)(176,061,742 - 176,062,398)
sequence
TACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCACGGGCCACCATCCAGCTCTCGACCTGGTCACACTTTCCTCG
GAATAACTGTGTGTGTGTGGGGGGGGTAGGTGAAATCAGAGGCAGGCATG
TGGTAATTCTAGATGGGCGAAGGAACTGATCTTACCCTTCCTCATTGTGA
TGACACAAAACATCCTGCCAGGGATGTTACATCCTCTCCCACGGCATTCT
TAGAATGAATCTCAAGTACCTTGTCACTTCACTGTTTGCTTTAAAGATAC
CATGTGTTCTATGAGCTATAGTAAATGTGAAGATACTGCCAGTGTACGGT
ATTCATCTAGTAGATATAGTAGATAGGAACTGGTTTAGTCTCTCTCTCTC
TCTCTGTCTCTGTCTCTCTCAAGTAGAGACATAGTTTTGGCTAGTTTGTG
ATGGCAACAAATTCAGTATGCAGCTTGATCTACGTGTGTCTGATTTTCCG
CAGGTAACTTCTTTAGAACTTTGTACAGTATTAGATGTGTGTAATATATC
CATATTCTTTCATCACACACTGTGATCACTCCTTTTTTTATCCTTAGCGG
ATTCATACATTATATTCTGTTAGTAAACATCTCCTATTGTAATGATATTC
ATAGAATTGTGACCTTCATTGCTATTCTTCATGAAAAACAATCCTTCAGT
TAATTACTTAATAATAATGCCAATAATTCCATT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACATCTGTCTGAGATGAAGGTGGAA
CATTTTCATGAAGATAAACCTCCAAGCTGGTAGAGGGGGAGAGTCACTTA
GGAAGCCTTCCTTCCATTTACTGAATATTGAGAGACAGCAATTATCTTGG
GAAAGAAAAACATACATACAGAAGTCAGTGGTAATATCACATTGCTCATG
TGACATATAAAAATAATTAACATTTTTACTGCTATGTTATTTCCCACTGT
TACGACATCCTCAGAGTTTTCTAAATAAAATTAGAATCCAAGGACAAGCT
ACAGCAGTGGTCAGTCACCAGACAACTTGATCTGCAGCTCAGGCTAATCT
TGTCTCTGTGTTTAGATGTCACATGCATCCTTCCATTTGCTTGTGTTTCC
TTTGTCAGCATTGAGGTCTCACTCTCTTTTGAGTAACTGTATGAGTAAGA
AGCTTAGTAGGATCAGAGCTAATTTCTACCTAATTGTCTTATCCTATAAG
AGAATTTAAAGACGTCAGTCCTGGACTTGTTAACAGTCTCATGAATAGTC
ATGGTGAGGGCTAAGACCAGCAACTAAATGGGCTTACAGCTGTTTCATGT
GCTTCCCTAAGATGGTAGAAACTGCAGCAATTACCAGAGTCTGGGTCTAA
GAGGTACTTGCGGACAGTGCACTGATACCAGTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_d08.b1 MSMg01no548_d08.b1 CHROMAT_FILE:
MSMg01no548_d08.b1 PHD_FILE: MSMg01no548_d08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:04 2005
         (676 letters)



>mm_chr1_176145124_176146199
          Length = 1076

 Score = 1048 bits (542), Expect = 0.0
 Identities = 542/542 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcacgggccaccatccagctctcgacctggtcacactttcctcggaataactg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ggaattctcacgggccaccatccagctctcgacctggtcacactttcctcggaataactg 483

                                                                       
Query: 64  tgtgtgtgtggggggggtaggtgaaatcagaggcaggcatgtggtaattctagatgggcg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tgtgtgtgtggggggggtaggtgaaatcagaggcaggcatgtggtaattctagatgggcg 423

                                                                       
Query: 124 aaggaactgatcttacccttcctcattgtgatgacacaaaacatcctgccagggatgtta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aaggaactgatcttacccttcctcattgtgatgacacaaaacatcctgccagggatgtta 363

                                                                       
Query: 184 catcctctcccacggcattcttagaatgaatctcaagtaccttgtcacttcactgtttgc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 catcctctcccacggcattcttagaatgaatctcaagtaccttgtcacttcactgtttgc 303

                                                                       
Query: 244 tttaaagataccatgtgttctatgagctatagtaaatgtgaagatactgccagtgtacgg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tttaaagataccatgtgttctatgagctatagtaaatgtgaagatactgccagtgtacgg 243

                                                                       
Query: 304 tattcatctagtagatatagtagataggaactggtttagtctctctctctctctctgtct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tattcatctagtagatatagtagataggaactggtttagtctctctctctctctctgtct 183

                                                                       
Query: 364 ctgtctctctcaagtagagacatagttttggctagtttgtgatggcaacaaattcagtat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ctgtctctctcaagtagagacatagttttggctagtttgtgatggcaacaaattcagtat 123

                                                                       
Query: 424 gcagcttgatctacgtgtgtctgattttccgcaggtaacttctttagaactttgtacagt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 gcagcttgatctacgtgtgtctgattttccgcaggtaacttctttagaactttgtacagt 63

                                                                       
Query: 484 attagatgtgtgtaatatatccatattctttcatcacacactgtgatcactccttttttt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  attagatgtgtgtaatatatccatattctttcatcacacactgtgatcactccttttttt 3

             
Query: 544 at 545
           ||
Sbjct: 2   at 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no548_d08.g1 MSMg01no548_d08.g1 CHROMAT_FILE:
MSMg01no548_d08.g1 PHD_FILE: MSMg01no548_d08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:04 2005
         (657 letters)



>mm_chr1_176061542_176062598
          Length = 1057

 Score = 1270 bits (657), Expect = 0.0
 Identities = 657/657 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatctgtctgagatgaaggtggaacattttcatgaagataaacctccaagctggtagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatctgtctgagatgaaggtggaacattttcatgaagataaacctccaagctggtagag 260

                                                                       
Query: 61  ggggagagtcacttaggaagccttccttccatttactgaatattgagagacagcaattat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggagagtcacttaggaagccttccttccatttactgaatattgagagacagcaattat 320

                                                                       
Query: 121 cttgggaaagaaaaacatacatacagaagtcagtggtaatatcacattgctcatgtgaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgggaaagaaaaacatacatacagaagtcagtggtaatatcacattgctcatgtgaca 380

                                                                       
Query: 181 tataaaaataattaacatttttactgctatgttatttcccactgttacgacatcctcaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tataaaaataattaacatttttactgctatgttatttcccactgttacgacatcctcaga 440

                                                                       
Query: 241 gttttctaaataaaattagaatccaaggacaagctacagcagtggtcagtcaccagacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttttctaaataaaattagaatccaaggacaagctacagcagtggtcagtcaccagacaa 500

                                                                       
Query: 301 cttgatctgcagctcaggctaatcttgtctctgtgtttagatgtcacatgcatccttcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttgatctgcagctcaggctaatcttgtctctgtgtttagatgtcacatgcatccttcca 560

                                                                       
Query: 361 tttgcttgtgtttcctttgtcagcattgaggtctcactctcttttgagtaactgtatgag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttgcttgtgtttcctttgtcagcattgaggtctcactctcttttgagtaactgtatgag 620

                                                                       
Query: 421 taagaagcttagtaggatcagagctaatttctacctaattgtcttatcctataagagaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taagaagcttagtaggatcagagctaatttctacctaattgtcttatcctataagagaat 680

                                                                       
Query: 481 ttaaagacgtcagtcctggacttgttaacagtctcatgaatagtcatggtgagggctaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttaaagacgtcagtcctggacttgttaacagtctcatgaatagtcatggtgagggctaag 740

                                                                       
Query: 541 accagcaactaaatgggcttacagctgtttcatgtgcttccctaagatggtagaaactgc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 accagcaactaaatgggcttacagctgtttcatgtgcttccctaagatggtagaaactgc 800

                                                                    
Query: 601 agcaattaccagagtctgggtctaagaggtacttgcggacagtgcactgataccagt 657
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agcaattaccagagtctgggtctaagaggtacttgcggacagtgcactgataccagt 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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