Query= MSMg01no548_e23.b1 MSMg01no548_e23.b1 CHROMAT_FILE:
MSMg01no548_e23.b1 PHD_FILE: MSMg01no548_e23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:11 2005
(612 letters)
>mm_chr1_152011154_152012165
Length = 1012
Score = 1120 bits (579), Expect = 0.0
Identities = 602/611 (98%), Gaps = 3/611 (0%)
Strand = Plus / Plus
Query: 5 gaattccaaggctatccttgactacattacatatagagttcaaggccagtcagggacaca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattccaaggctatccttgactacattacatatagagttcaaggccagtcagggacaca 261
Query: 65 gaaaaccatgttttagaaaaacaaacaaacaaacaaaatggtttagacaggcctaatctc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gaaaaccatgttttagaaaaacaaacaaacaaacaaaatggtttagacaggcctaatctc 321
Query: 125 caaactctgaaggctaagacaagaggacattcatgagttccaggttaacttatatataat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 caaactctgaaggctaagacaagaggacattcatgagttccaggttaacttatatataat 381
Query: 185 gaattcccaggtagcctgggctatagagtaaagccctgtctcaaaacag---aaaaaaaa 241
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 382 gaattcccaggtagcctgggctatagagtaaagccctgtctcaaaacagaaaaaaaaaaa 441
Query: 242 attatcaataaataaataaaatgtataaactaaaaagaaataaagaactgttggtaatgg 301
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 attatcaatcaataaataaaatgtataaactaaaaagaaataaagaactgttggtaatgg 501
Query: 302 gttcatcatttatattgagaatacagttttataacaaaaataattacaaacccacattgc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gttcatcatttatattgagaatacagttttataacaaaaataattacaaacccacattgc 561
Query: 362 tctaaacagtgtaaagctttattcactctggggcaagctaaactgtttctaacagaaaga 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tctaaacagtgtaaagctttattcactctggggcaagctaaactgtttctaacagaaaga 621
Query: 422 gtggtagagctagtgtctcttagtcataacatattaattcttaattacaacgggaacaaa 481
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 622 gtggtggagctagtgtctcttagtcataacatattaattcttaattacaacaggaacaaa 681
Query: 482 tccattaccaataaatccagggactatcaattaagcccacgaggaaatggtttgtgaaag 541
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 682 tccattaccaataaatccagggactatcaattaagcccatgaggaaatggtttgtaaaag 741
Query: 542 acttcccaccctcctaaatgagatacatctgacagataataatactcactctaatgtgcg 601
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 acttcccaccctcctaaataagatacatctgacagataataatactcactctaatgtgcg 801
Query: 602 tgcagcttttc 612
|||||||||||
Sbjct: 802 tgcagcttttc 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_e23.g1 MSMg01no548_e23.g1 CHROMAT_FILE:
MSMg01no548_e23.g1 PHD_FILE: MSMg01no548_e23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:12 2005
(617 letters)
>mm_chr1_152180455_152181472
Length = 1018
Score = 1123 bits (581), Expect = 0.0
Identities = 611/629 (97%), Gaps = 15/629 (2%)
Strand = Plus / Minus
Query: 1 atttgctagataagactggcctcgaactcttagagatccatcgacctctgcctccaaagt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 917 atttgctagataagactggcctcgaactcttagagatccatcgacctctgcccccaaagt 858
Query: 61 gctgggattaaagaaggtgtgcatcagcgctgccggctc---------tttttttttttt 111
||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 857 gctgggattaaagaaggcgtgcatcagcgctgccggctcttttttttttttttttttttt 798
Query: 112 t---ttggacaaatttcaaaatactttaaagaaaagtgaaagctaaaatcttacttttct 168
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 tcttttggacaaatttcaaaatactttaaagaaaagtgaaagctaaaatcttacttttct 738
Query: 169 tctctgcatcttgttatattgtttggaaaatgaaaacaatacttttcagatgcatattta 228
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 737 tctctgcatcttgttatattgtttggaaaataaaaacaatacttttcagatgcatattta 678
Query: 229 tggttattggagactaataaatgaaaccattttaatttactttttgagctttatgaagtt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tggttattggagactaataaatgaaaccattttaatttactttttgagctttatgaagtt 618
Query: 289 ttaagtactcaactcatgataggctttacacagactacttgtttcttcataggattttat 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ttaagtactcaactcatgataggctttacacagactacttgtttcttcataggattttat 558
Query: 349 ttttattgtacaaaccagtttataagcagtattcagtttgaaaagcccaaataaaaatgc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttttattgtacaaaccagtttataagcagtattcagtttgaaaagcccaaataaaaatgc 498
Query: 409 caagggaaaaatgaggagcaaaatctaacacggaacttgaaagggatttttacaatgatc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 caagggaaaaatgaggagcaaaatctaacacggaacttgaaagggatttttacaatgatc 438
Query: 469 taaacattgacattacccacctcctctgcttactagttatttgctaaaaaccacaatatc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 taaacattgacattacccacctcctctgcttactagttatttgctaaaaaccacaatatc 378
Query: 529 cttgcagtaaaatattatctcaatttgagtaattagtactaaaaagtgctatgtacataa 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cttgcagtaaaatattatctcaatttgagtaattagtactaaaaagtgctatgtacataa 318
Query: 589 ttttagtgtgtccccccctcccccgagtt 617
|||||||||||||||||| ||||||||
Sbjct: 317 ttttagtgtgtccccccc---cccgagtt 292
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1018
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1008
Effective search space: 611856
Effective search space used: 611856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
